PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9678_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 26333.8 Da PI: 8.2076 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.4 | 7.6e-42 | 6 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + GfrF Pt++el+ +yL++++eg++ ++++vi+ +d+++veP++Lp+ ++ ++ ++w+fF++r++++a+g r++r++ sgyWkatg+ +v+sk RrC9678_p2 6 TIGFRFYPTEDELIAFYLRNQLEGRSgDTMHRVIPVLDVFEVEPSHLPNmageRCLGDAEQWFFFVPRQEREARGGRPSRTIGSGYWKATGSPGPVFSK 104 68***********************96556678***************534553344778*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kkt+vfy+grap+g+kt+W m+ey++ RrC9678_p2 105 DNRMIGVKKTMVFYTGRAPTGRKTKWKMNEYKA 137 *******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-46 | 4 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.297 | 5 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-22 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTEELTIGFR FYPTEDELIA FYLRNQLEGR SGDTMHRVIP VLDVFEVEPS HLPNMAGERC 60 LGDAEQWFFF VPRQEREARG GRPSRTIGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG 120 RAPTGRKTKW KMNEYKAVDK TFNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPMGNFQAE 180 RMLTRDVAVG ETSVRVESSP EASMSGGEHG YLSMNGEIEP IWEWEQLNWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175806 | 0.0 | AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20. | |||
GenBank | AY086944 | 0.0 | AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444377.1 | 1e-169 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-141 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | M4CDX7 | 1e-153 | M4CDX7_BRARP; Uncharacterized protein | ||||
STRING | Bra002408.1-P | 1e-154 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-143 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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