PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9678_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 230aa    MW: 26333.8 Da    PI: 8.2076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9678_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.47.6e-4261372128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                 + GfrF Pt++el+ +yL++++eg++  ++++vi+ +d+++veP++Lp+    ++ ++ ++w+fF++r++++a+g r++r++ sgyWkatg+  +v+sk
  RrC9678_p2   6 TIGFRFYPTEDELIAFYLRNQLEGRSgDTMHRVIPVLDVFEVEPSHLPNmageRCLGDAEQWFFFVPRQEREARGGRPSRTIGSGYWKATGSPGPVFSK 104
                 68***********************96556678***************534553344778*************************************** PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +++ +g+kkt+vfy+grap+g+kt+W m+ey++
  RrC9678_p2 105 DNRMIGVKKTMVFYTGRAPTGRKTKWKMNEYKA 137
                 *******************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-464162IPR003441NAC domain
PROSITE profilePS5100546.2975162IPR003441NAC domain
PfamPF023655.4E-227136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTEELTIGFR FYPTEDELIA FYLRNQLEGR SGDTMHRVIP VLDVFEVEPS HLPNMAGERC  60
LGDAEQWFFF VPRQEREARG GRPSRTIGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG  120
RAPTGRKTKW KMNEYKAVDK TFNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPMGNFQAE  180
RMLTRDVAVG ETSVRVESSP EASMSGGEHG YLSMNGEIEP IWEWEQLNWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-32516717170NO APICAL MERISTEM PROTEIN
1ut4_B4e-32516717170NO APICAL MERISTEM PROTEIN
1ut7_A4e-32516717170NO APICAL MERISTEM PROTEIN
1ut7_B4e-32516717170NO APICAL MERISTEM PROTEIN
3swm_A5e-32516720173NAC domain-containing protein 19
3swm_B5e-32516720173NAC domain-containing protein 19
3swm_C5e-32516720173NAC domain-containing protein 19
3swm_D5e-32516720173NAC domain-containing protein 19
3swp_A5e-32516720173NAC domain-containing protein 19
3swp_B5e-32516720173NAC domain-containing protein 19
3swp_C5e-32516720173NAC domain-containing protein 19
3swp_D5e-32516720173NAC domain-containing protein 19
4dul_A4e-32516717170NAC domain-containing protein 19
4dul_B4e-32516717170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758060.0AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBankAY0869440.0AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444377.11e-169PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR31e-141NAC90_ARATH; NAC domain-containing protein 90
TrEMBLM4CDX71e-153M4CDX7_BRARP; Uncharacterized protein
STRINGBra002408.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-143NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]