PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9594_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36377.7 Da PI: 8.7368 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.5e-53 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ ++++ RrC9594_p1 16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK 113 79****************************.89***************988899********************************************* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ pkg ktdW+mheyrl RrC9594_p1 114 VGVKKALVFYGGKPPKGIKTDWIMHEYRL 142 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 9 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.647 | 16 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MENMGDSTIG PGHPHLPPGF RFHPTDEELV VHYLKKKAAS IPLPVSIIAE IDLYKFDPWE 60 LPSKASFGEQ EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL 120 VFYGGKPPKG IKTDWIMHEY RLTDGNLNTA AKPPDSTTSR KNSLRLDDWV LCRIYKKNSS 180 QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNNNNNN NNNEEHFFDG MAVSSDKRSL 240 CGQYRIGHEA TGSSSFGSFL SSKRFHHTSD LNNDNYNVSF VSMLSEIPQS SGFHGNGVID 300 TTSTLADHGV LRQAFQLPNM NWHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-74 | 16 | 180 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 4e-74 | 16 | 180 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-74 | 16 | 180 | 17 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974759 | 0.0 | KF974759.1 Brassica napus NAC transcription factor 25-1 (NAC25-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454723.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 0.0 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A078FI47 | 0.0 | A0A078FI47_BRANA; BnaA09g13880D protein | ||||
STRING | Bo01282s010.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 0.0 | NAC domain containing protein 25 |