PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9511_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 291aa    MW: 33356.3 Da    PI: 6.937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9511_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-1180123654
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  RrC9511_p2  80 FTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 123
                 578*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.7E-1272132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-1072128No hitNo description
SuperFamilySSF474597.85E-1474141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.05674123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-978123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-980129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSGSCISYDP LFHLNLPPQP PLILTPNDYS GFFLGTDANT QRDQQNVGDE NNNDQFDSGI  60
IEFSKNIRRK RRGKQKNKPF TTERERRCHL NERYEALKLL IPNPSKGDRA SILQDGIDYI  120
NELRRRVSEL KYLVERKRCG GRHKNNNEVD NNNNNTNLDD RNIVNDDDGE NMEKNESDVI  180
DQCSSNNSLR CSWLQRKSKV TEVDVRIVDD EVTIKVVQKK KINCLLVVTK VLDQLHLDLH  240
HVSGGQIGEH YSFLLNTKIN EGSTIYASAI ANKVIEVVDQ HYMASLPINS Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481763.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX461e-166BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A078FRA31e-176A0A078FRA3_BRANA; BnaC04g42040D protein
STRINGBo4g176060.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-158bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]