PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC947_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 262aa    MW: 28903.4 Da    PI: 9.6224
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC947_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222021.8e-6211346146
     DUF822   6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkssalas 105
                +ptwkErEnnk+RERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+       s  ++s +s +q+s++ssa++s
  RrC947_p3   1 MPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCFEAGWIVHEDGTTYRKGSRPT-----ETSPPRVSACSTIQLSPHSSAFQS 95 
                69*********************************************************************.....56778899**************** PP

     DUF822 106 pvesysaspksssfpspssldsislasaasllpvlsvlslv 146
                p++sy++sp+sss+psp+++d ++++  a l+p+l++l+++
  RrC947_p3  96 PIPSYQTSPASSSYPSPTRFDPNQSS--AYLIPYLQNLASS 134
                ***********************776..9******999764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.5E-581131IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPTWKERENN KKRERRRRAI AAKIFTGLRS QGNYKLPKHC DNNEVLKALC FEAGWIVHED  60
GTTYRKGSRP TETSPPRVSA CSTIQLSPHS SAFQSPIPSY QTSPASSSYP SPTRFDPNQS  120
SAYLIPYLQN LASSGNLAPL RISNSAPVTP PVSSPRGSHP RLPKPQISNF PVSAPSSPTR  180
RLHHHYTSIP ECDESDVSTV DSCRWTRFQP VTVSQTCPPS PTFNLVKNSV CVGGGDVSVK  240
PWEGEKIHDV GVDDLELTLG KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-24270374442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-24270374442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-24270374442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-24270374442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891890.0AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477177.11e-166PREDICTED: LOW QUALITY PROTEIN: BES1/BZR1 homolog protein 1-like
SwissprotQ9S7F31e-134BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLA0A3P6E5Z41e-164A0A3P6E5Z4_BRAOL; Uncharacterized protein
STRINGBo7g099470.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144671721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-134BES1/BZR1 homolog 1