PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9466_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HRT-like
Protein Properties Length: 805aa    MW: 88508.8 Da    PI: 8.7498
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9466_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like48.12e-15289319131
    HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                 +CGvile G +C+r PvkgRKRCeeHKG+R+
  RrC9466_p2 289 VCGVILESGGCCSRCPVKGRKRCEEHKGQRV 319
                 7*****************************7 PP
2HRT-like49.76.1e-16345375131
    HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                 +CGvil +  +C++ Pv+gRKRCe HKGmRi
  RrC9466_p2 345 TCGVILPNMEPCSKRPVPGRKRCEDHKGMRI 375
                 7*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511618.04E-60527773IPR011004Trimeric LpxA-like
SMARTSM009711.8E-50527631IPR010493Serine acetyltransferase, N-terminal
PfamPF064265.8E-35527630IPR010493Serine acetyltransferase, N-terminal
Gene3DG3DSA:1.10.3130.106.9E-33527631No hitNo description
Gene3DG3DSA:1.10.3130.106.0E-8639671No hitNo description
CDDcd033545.01E-52669769No hitNo description
Gene3DG3DSA:2.160.10.101.2E-33672778No hitNo description
PfamPF001324.8E-11722755IPR001451Hexapeptide repeat
PROSITE patternPS001010731759IPR018357Hexapeptide transferase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006535Biological Processcysteine biosynthetic process from serine
GO:2000033Biological Processregulation of seed dormancy process
GO:0005737Cellular Componentcytoplasm
GO:0009001Molecular Functionserine O-acetyltransferase activity
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MNFGDGHSFA VVPTVYKRED YKRTKHDAVF SKWKVLSLSK FRNYQRSNDW EDFKNGKDGV  60
ARYRVQNLPR RSCPGLYELG VAVIGHHDQA RKLDSDDVLA AYLGQAESVR SRLQSYGRSG  120
AHLRNVNNNL TIESPDKKAV TTSLFEDIFF KDGSVLYRWA PMGSKREAEA TEGMLLSTFD  180
YAWNKGSNGE RRQLDLLMKL GDREFMRSRK SGIISRVLFP FLRNQVGIRI KGEKHVLEEE  240
RKLSSDVGEE KKKKKSISFL ASIIKLSRSR PQPVSDRSDE INSSCSDSVC GVILESGGCC  300
SRCPVKGRKR CEEHKGQRVC RVSPVKPQPE SFIGQDYKHE DSDVTCGVIL PNMEPCSKRP  360
VPGRKRCEDH KGMRINAFLF LLNRTDLEKT IKDEKPDPES PTSNITEEEE ALSRFCEATT  420
KSGVPCTRCS PKGSKRCWQH KEKTSGDDLP VKVHPVAGTQ VRCGVQLCNG SVCERIKSLF  480
YIAVVKMPPA GELQHSPGKQ SPNTQPSEEE AAAAILAAAA DAEAAGLWTQ IKAEARHDAE  540
EEPALASYLY STILSHSSLE RSISFHLGNK LCSSTLLSTL LYDLFLNTFT SDPSLRNATV  600
ADLRAARVRD PACISFSQCL LNYKGFLAIQ VNLDRPIGAI QAHRVSHKLW TQSRKPLALA  660
LHSRVSDVFA VDIHPAARIG KGILLDHATG VVIGETAVIG NNVSILHHVT LGGTGKACGD  720
RHPKIGDGCL IGAGATILGN VKIGAGAKVG AGSVVLIDIP PRATAVGNPA RLVGGKEKPT  780
IHDEECPGES MDHTSFISEW SDYII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4n69_A1e-16152380516286Serine Acetyltransferase Apoenzyme
4n69_B1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6a_A1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6a_B1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6b_A1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6b_B1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6b_C1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6b_D1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6b_E1e-16152380516286Serine Acetyltransferase Apoenzyme
4n6b_F1e-16152380516286Serine Acetyltransferase Apoenzyme
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457851.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A3N6STW80.0A0A3N6STW8_BRACR; Uncharacterized protein
STRINGBo9g126290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2