PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9438_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 187aa MW: 21215.8 Da PI: 7.5104 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.1 | 2.2e-14 | 85 | 169 | 15 | 99 |
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + k ++P++ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ ++fl+d vp++ RrC9438_p2 85 EAKMIRFPMTRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSEEAYGSSVKDKKKFIHYKHLSSVVSNEGRYEFLTDCVPEK 169 567789****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.5E-20 | 90 | 153 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.8E-23 | 91 | 168 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.04E-17 | 100 | 168 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MVSSKKPKSD VVVVDKGNGL NNTRSSGSKA KNKKKTPNKA DLKDYVARKE TEEEVRDEIS 60 ESSSSSEEAR RDDEPKESNG VVSEEAKMIR FPMTRIRRIM RSDNSAPQIM QDAVFLVNKA 120 TELFIERFSE EAYGSSVKDK KKFIHYKHLS SVVSNEGRYE FLTDCVPEKL KAEVALEEWE 180 RSMADVG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797147 | 3e-42 | KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480040.1 | 1e-104 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | M4DQ75 | 3e-85 | M4DQ75_BRARP; Uncharacterized protein | ||||
STRING | Bra018668.1-P | 6e-86 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-62 | nuclear factor Y, subunit C10 |