PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC916_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRF
Protein Properties Length: 474aa    MW: 51759.7 Da    PI: 9.3487
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC916_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.31.5e-24209252144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e
  RrC916_p1 209 DPEPGRCRRTDGKKWRCSKDAVPDQKYCERHINRGRHRSRKPVE 252
                79***************************************998 PP

2QLQ54.53.5e-19145181137
        QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll  iqk
  RrC916_p1 145 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIQK 181
                59*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-12145181IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.9E-13146180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.884146181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479209253IPR014977WRC domain
PfamPF088795.2E-21210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDLGSVAGNV NGSPSLKELR GSKQDRSGFD GEDCLQQSSK LARTTLTIAE DKHLPSAAYS  60
RPMLFHQGIP LTRSASLLSS DSRRQEHMLS FSDKPEAYDF TKYVGLDSNK NSLSPFLHQL  120
PPPYCRSSGG GGYGSGGMMS MQGKGPFTLT QWAELEQQAL IYKYITANVP VPSSLLISIQ  180
KSFYPYGSLP PSSFGWGTFH LGFAGGNMDP EPGRCRRTDG KKWRCSKDAV PDQKYCERHI  240
NRGRHRSRKP VEVKPGLTPA PAPSKAVASR NRSLPTASQL PTNRVQNAIY PSTVSLQPKE  300
ESNNIPFGFG HVTSPSLLTS SYLDFSGNQE DKTSVNHSHN NSWPEELKSD WTQLSMSIPV  360
ASSSSPSSTA REKVTLSPLR LSREFDLPIQ SQQETLESVR KVNTWIPISW GNSLGGPLGE  420
VLNNSTTSSP TLGSSPTGVL QKSTFCSLSN SSSVSSPIAE NNRNNNVDYF HYTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8316610.0JN831661.1 Brassica napus growth-regulating factor 2 (GRF2a2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468316.10.0PREDICTED: growth-regulating factor 2-like
SwissprotQ8L8A80.0GRF2_ARATH; Growth-regulating factor 2
TrEMBLA0A0D3A1690.0A0A0D3A169_BRAOL; Uncharacterized protein
STRINGBo1g003460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.10.0growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]