PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC916_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRF | ||||||||
Protein Properties | Length: 474aa MW: 51759.7 Da PI: 9.3487 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 209 | 252 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e RrC916_p1 209 DPEPGRCRRTDGKKWRCSKDAVPDQKYCERHINRGRHRSRKPVE 252 79***************************************998 PP | |||||||
2 | QLQ | 54.5 | 3.5e-19 | 145 | 181 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll iqk RrC916_p1 145 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIQK 181 59*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.1E-12 | 145 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.9E-13 | 146 | 180 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.884 | 146 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.479 | 209 | 253 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.2E-21 | 210 | 252 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MDLGSVAGNV NGSPSLKELR GSKQDRSGFD GEDCLQQSSK LARTTLTIAE DKHLPSAAYS 60 RPMLFHQGIP LTRSASLLSS DSRRQEHMLS FSDKPEAYDF TKYVGLDSNK NSLSPFLHQL 120 PPPYCRSSGG GGYGSGGMMS MQGKGPFTLT QWAELEQQAL IYKYITANVP VPSSLLISIQ 180 KSFYPYGSLP PSSFGWGTFH LGFAGGNMDP EPGRCRRTDG KKWRCSKDAV PDQKYCERHI 240 NRGRHRSRKP VEVKPGLTPA PAPSKAVASR NRSLPTASQL PTNRVQNAIY PSTVSLQPKE 300 ESNNIPFGFG HVTSPSLLTS SYLDFSGNQE DKTSVNHSHN NSWPEELKSD WTQLSMSIPV 360 ASSSSPSSTA REKVTLSPLR LSREFDLPIQ SQQETLESVR KVNTWIPISW GNSLGGPLGE 420 VLNNSTTSSP TLGSSPTGVL QKSTFCSLSN SSSVSSPIAE NNRNNNVDYF HYTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN831661 | 0.0 | JN831661.1 Brassica napus growth-regulating factor 2 (GRF2a2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468316.1 | 0.0 | PREDICTED: growth-regulating factor 2-like | ||||
Swissprot | Q8L8A8 | 0.0 | GRF2_ARATH; Growth-regulating factor 2 | ||||
TrEMBL | A0A0D3A169 | 0.0 | A0A0D3A169_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g003460.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 0.0 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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