PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC9089_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36230.8 Da PI: 6.3931 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.8e-52 | 22 | 151 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 lppGfrFhPtdeel+++yL+ kv + l +i+evd++++ePw+Lp+++k +e+ewyf+s rd+ky+tg r+nrat++gyWkatgkdke++s +g RrC9089_p1 22 LPPGFRFHPTDEELITFYLASKVFHGGLCG-LHIAEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEIFSGggGG 119 79************************9877.56***************9889999***************************************98788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +lvg+kktLvfykgrap+g k++Wvmheyrle RrC9089_p1 120 ALVGMKKTLVFYKGRAPRGLKSKWVMHEYRLE 151 89****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-62 | 19 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.946 | 22 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MMLAVEDVLS ELAGEEKNNG GLPPGFRFHP TDEELITFYL ASKVFHGGLC GLHIAEVDLN 60 RCEPWELPEM AKMGEREWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EIFSGGGGGA 120 LVGMKKTLVF YKGRAPRGLK SKWVMHEYRL ETDLSHRHTC KEEWVICRVL NKPGDRKNVG 180 IHNKISYLHN TSLSTTQHHH LEILPTLLEP SKTLTNFPPL PYDDTHQNYN NLFHESLGHN 240 VDELKVLINP VVSQLNGVIF SPENNYYNND ENDNFGVKTE QYSNGDNTDL DVRDYLEKPL 300 FQEAGYSLLG LSSSPGPPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 22 | 172 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468921.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-177 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A3P6DIK0 | 0.0 | A0A3P6DIK0_BRAOL; Uncharacterized protein | ||||
STRING | Bra008259.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-168 | NAC family protein |
Publications ? help Back to Top | |||
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