PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9055_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 221aa    MW: 24269.2 Da    PI: 7.2963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9055_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-1766116255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GV +++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  RrC9055_p1  66 HYRGVGRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAVEAARGYDRAAFKLRG 116
                 7*****9**.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-3065125IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2266125IPR016177DNA-binding domain
CDDcd000182.78E-3066124No hitNo description
PfamPF008475.8E-1166116IPR001471AP2/ERF domain
PROSITE profilePS5103223.45966124IPR001471AP2/ERF domain
SMARTSM003802.4E-3566130IPR001471AP2/ERF domain
PRINTSPR003674.1E-96778IPR001471AP2/ERF domain
PRINTSPR003674.1E-990106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAFSQDQSAL DLITQHLLTD FPSLETFVSS IHQSTTSTLS QRKPSLATIS VPTTTAAVVQ  60
EDDHRHYRGV GRRPWGKYAA EIRDPNKKGV RVWLGTFDTA VEAARGYDRA AFKLRGSKAI  120
LNFPLEAGKH EDSGDDDNNK KTVALKAKRK RPETEDENHG INLISHKAVK REETEAQGEA  180
CPLTPSSWMG FWDGVDGIGM GLFSVPPLSP YPSLGHSQLG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2765131470ATERF1
3gcc_A1e-2765131470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139150KKTVALKAKRKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462047.11e-154PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY901e-120EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A3N6QP331e-150A0A3N6QP33_BRACR; Uncharacterized protein
STRINGBo9g100030.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-122ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]