PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC903_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 535aa MW: 60589.5 Da PI: 4.4506

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC903_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	387	428	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++++ el++++++++Gg+ + + + ++ Rt+ q+k+++ RrC903_p2 387 RAKWSKQDTELFYEGIQEFGGN-LSMVQQLFP-DRTRQQIKLKF 428 569***************99.*****.*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	2.8E-26	380	464	No hit	No description
SuperFamily	SSF46689	8.22E-9	382	436	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-6	384	429	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.28	385	436	IPR017884	SANT domain
SMART	SM00717	1.2E-7	386	434	IPR001005	SANT/Myb domain
CDD	cd00167	1.62E-5	389	429	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MDYLDLDDQP AAATAPAARA GAKFKPKGRP QPKKKLLSLS TSQTTLSTLH LPQETLSTQS 60 QDPVSLDDAS TIVPDSEPIN QSTIETISKE NVFSQGLSVL RACSNVNSEG KKCDTATEAA 120 PAYPDDDDPR RQDSGHFVTQ ETDDIIHPRT QRMQTGEDEC HWNMETLNIV QEEGIITAAY 180 EQHTGKFQPK PRLPDAVIEE PTESHCSVDY TSDANQSGLM VVVESRNELN TLGNTVVEEE 240 TLTGRESKKG KSKRGRKQKT TSEEEPNKSL EKKKKFKHSG RRQRNRTLEK ELLETPDDEI 300 KYLPIRDMLR LVEYREWMEK KEAKGAPVVT PTQESNTNAP EDNHYYSQGF DAEDEFGMMV 360 EAENQENNVV KPDSPVNYQT YMNKTPRAKW SKQDTELFYE GIQEFGGNLS MVQQLFPDRT 420 RQQIKLKFKL EERRNPLKLN DALTTRSKHI THFHTVIKKL QEEAAAEREG EEEDGEEEET 480 TTDVPENEEP AKSEETGDGV ADVKEPDGGY IENNEGDECE GDDDDDFWNS YKSEM

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MDYLDLDDQP AAATAPAARA GAKFKPKGRP QPKKKLLSLS TSQTTLSTLH LPQETLSTQS  60
QDPVSLDDAS TIVPDSEPIN QSTIETISKE NVFSQGLSVL RACSNVNSEG KKCDTATEAA  120
PAYPDDDDPR RQDSGHFVTQ ETDDIIHPRT QRMQTGEDEC HWNMETLNIV QEEGIITAAY  180
EQHTGKFQPK PRLPDAVIEE PTESHCSVDY TSDANQSGLM VVVESRNELN TLGNTVVEEE  240
TLTGRESKKG KSKRGRKQKT TSEEEPNKSL EKKKKFKHSG RRQRNRTLEK ELLETPDDEI  300
KYLPIRDMLR LVEYREWMEK KEAKGAPVVT PTQESNTNAP EDNHYYSQGF DAEDEFGMMV  360
EAENQENNVV KPDSPVNYQT YMNKTPRAKW SKQDTELFYE GIQEFGGNLS MVQQLFPDRT  420
RQQIKLKFKL EERRNPLKLN DALTTRSKHI THFHTVIKKL QEEAAAEREG EEEDGEEEET  480
TTDVPENEEP AKSEETGDGV ADVKEPDGGY IENNEGDECE GDDDDDFWNS YKSEM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484165.1	0.0	PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBL	A0A0D3DID7	0.0	A0A0D3DID7_BRAOL; Uncharacterized protein
STRING	Bo7g119350.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5154	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-126	MYB_related family protein