PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC9008_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 284aa MW: 31562.5 Da PI: 5.5199

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC9008_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.9e-15	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede l+ v++ G g+W+++ + g+ R++k+c++rw ++l RrC9008_p1 27 KGPWTAAEDETLAAHVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 74 79******************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.445	22	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-20	24	84	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-11	26	76	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-14	27	74	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.62E-16	28	89	IPR009057	Homeodomain-like
CDD	cd00167	3.73E-10	29	74	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MIMYGGGAEK EGGLANHMSN GGVTLKKGPW TAAEDETLAA HVRENGEGNW NAVQKNTGLA 60 RCGKSCRLRW ANHLRPNLRK GSFTGEEEHS YSSFLTLPYS SPTAQTANYH NTNNSYSSFS 120 LNPSPSSYPA TTSSPSFLHS HYTPNYSSTS FHNNPVYSMK QELSSYQIPQ ISVFNNVNNF 180 TDNEKQNNTN LHRSISCSLL EDLVSNNMIL LKTYVPYKEE ESLQMNTMQD DIAKLLDWRS 240 DSVEISNGQS SVVTDDNLVL DVHQLNSLFP ADSTAAETRT NDEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250\|UniProtKB:O80883, ECO:0000269\|PubMed:23791732, ECO:0000269\|PubMed:24278028}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018465275.1	1e-114	PREDICTED: myosin-G heavy chain-like, partial
Swissprot	Q9S773	3e-61	MYB97_ARATH; Transcription factor MYB97
TrEMBL	A0A078FZZ1	1e-101	A0A078FZZ1_BRANA; BnaC09g31560D protein
TrEMBL	A0A3P6E1W1	1e-100	A0A3P6E1W1_BRAOL; Uncharacterized protein
STRING	Bo9g119060.1	1e-100	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9939	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55020.1	2e-44	myb domain protein 120

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zheng Z, et al. Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy. Plant Physiol., 2017. 174(3): p. 1764-1778 [PMID:28515145]