PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9001_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 241aa    MW: 27362.7 Da    PI: 4.5746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9001_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183887255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  RrC9001_p1 38 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 87
                79*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-213896IPR016177DNA-binding domain
PROSITE profilePS5103221.2463895IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-283895IPR001471AP2/ERF domain
PfamPF008473.2E-133887IPR001471AP2/ERF domain
SMARTSM003801.2E-3238101IPR001471AP2/ERF domain
CDDcd000183.84E-323894No hitNo description
PRINTSPR003676.2E-93950IPR001471AP2/ERF domain
PRINTSPR003676.2E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDVNGNLNVS SSSRSKKSHR KNQQQPQPQP HQQNEEIKYV GVRRRPWGRY AAEIRNPTTK  60
ERYWLGTFDT AEEAALAYDR AARSIRGLTA RTNFVYSDMP HGSSVTSFIS PDESQRFISD  120
LFNPPCQPEA PDYANNNLYS LTNNQNQNSN EFSYNGWPHE SECGYQSINT NDERCDHELP  180
PLPPSSCFGA ELIIPETDSY WNVANASMDY SFELDAFLDQ NSLVESGTEG FDSSASKLFY  240
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1935941171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489506.10.0PREDICTED: ethylene-responsive transcription factor ERF087-like
RefseqXP_018489516.10.0PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ901e-127ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A3P5Y2Z91e-134A0A3P5Y2Z9_BRACM; Uncharacterized protein
STRINGBo7g048420.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-100ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]