PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8_p11
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 756aa    MW: 84131.9 Da    PI: 5.2454
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8_p11genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.17.5e-1143807501373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k + + aN+ 
  RrC8_p11 380 LRTLLVLCAQAVSVDDRRTASEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYISVCPFKKAAIIFANHS 477
               5789**************************************************************9999...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               +++ ++ +e++Hi+Df+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e + etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++k+gE
  RrC8_p11 478 VMRLTADAETIHIVDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVDETGRRLARYCQRYKVPFEYNA-IAQKWETIRVEDLKIKEGE 577
               **************************************************99*****************************.7****************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                ++Vn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ +    ++n++ F++rf eal +ysalfd+ ++kl+re+e r + E+e+ grei+nvvace
  RrC8_p11 578 FTVVNSLFRFKNLLDETVVVNSPRDAVLKLIRQVNPNVFIQAVLSGSYNAPFFVTRFREALFHYSALFDMCDSKLSREDEMRLMFEKEFYGREIMNVVACE 678
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               g+er+er et+++W++r+ +aGF+++p++++ +++ k+ +++ +++ + ++++ ++l++gWk+r +++ S+W
  RrC8_p11 679 GTERVERPETYKQWQARVIRAGFRQLPVEKELMQNLKAKIENGYDKNFDIDQNGNWLLQGWKGRIVYASSVW 750
               ********************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.002354731IPR005202Transcription factor GRAS
PfamPF035142.6E-111380750IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MGSYSGGSLD GFDFTSEFDD LPASNQTVDS SDGFYLDDPL LNFASFDHYS SAPPPPPETY  60
HHHPQKNNIA AAAASSGDRL SSPSDDSEFS DSVLKYISQV LMEEDMEEKP CMFHDALALQ  120
AAEKSLYEAL GEQYPSSTSS MDLGGAYPEK LSPDGSFPGF SDYASTTTTT SSDSHWSVDG  180
LENNNRPSWL QTPIPSNFVF QSTSRSNSVT TSGGGGNSAD DLVSRMFKDS ELAMQFKRGV  240
DEASKFLPKS SQLFIDVDSY VPKNSGLDEV SVKTEKRDEA EHPPPPAPSN RLTGKKSHWR  300
DEDSDLVEER SNKQSAVYVE ETELSEMFDK ILLCGGTGQP VCITNQKFQT ESNGGGGGGA  360
KARGKKSTAN DSKKETAADL RTLLVLCAQA VSVDDRRTAS EMLRQIREHS SPLGNGSERL  420
AHYFANSLEA RLAGTGTQIY TALSSKKTSA ADMLKAYQTY ISVCPFKKAA IIFANHSVMR  480
LTADAETIHI VDFGISYGFQ WPALIHRLSF RPGGPPKLRI TGIELPQRGF RPAEGVDETG  540
RRLARYCQRY KVPFEYNAIA QKWETIRVED LKIKEGEFTV VNSLFRFKNL LDETVVVNSP  600
RDAVLKLIRQ VNPNVFIQAV LSGSYNAPFF VTRFREALFH YSALFDMCDS KLSREDEMRL  660
MFEKEFYGRE IMNVVACEGT ERVERPETYK QWQARVIRAG FRQLPVEKEL MQNLKAKIEN  720
GYDKNFDIDQ NGNWLLQGWK GRIVYASSVW VPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4938775425381Protein SCARECROW
5b3h_D2e-4938775425381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450564.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A3N6RAA30.0A0A3N6RAA3_BRACR; Uncharacterized protein
STRINGBo01118s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]