PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8_p11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRAS | ||||||||
Protein Properties | Length: 756aa MW: 84131.9 Da PI: 5.2454 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 372.1 | 7.5e-114 | 380 | 750 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL+ cA+avs +d + a+++L +++e++sp g+ +Rla+yf++ L+arla++++++y al++++ts ++ l+a++++ v+P+ k + + aN+ RrC8_p11 380 LRTLLVLCAQAVSVDDRRTASEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYISVCPFKKAAIIFANHS 477 5789**************************************************************9999...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 +++ ++ +e++Hi+Df+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g +e + etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++k+gE RrC8_p11 478 VMRLTADAETIHIVDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVDETGRRLARYCQRYKVPFEYNA-IAQKWETIRVEDLKIKEGE 577 **************************************************99*****************************.7****************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 ++Vn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ + ++n++ F++rf eal +ysalfd+ ++kl+re+e r + E+e+ grei+nvvace RrC8_p11 578 FTVVNSLFRFKNLLDETVVVNSPRDAVLKLIRQVNPNVFIQAVLSGSYNAPFFVTRFREALFHYSALFDMCDSKLSREDEMRLMFEKEFYGREIMNVVACE 678 ***************************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g+er+er et+++W++r+ +aGF+++p++++ +++ k+ +++ +++ + ++++ ++l++gWk+r +++ S+W RrC8_p11 679 GTERVERPETYKQWQARVIRAGFRQLPVEKELMQNLKAKIENGYDKNFDIDQNGNWLLQGWKGRIVYASSVW 750 ********************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.002 | 354 | 731 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-111 | 380 | 750 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MGSYSGGSLD GFDFTSEFDD LPASNQTVDS SDGFYLDDPL LNFASFDHYS SAPPPPPETY 60 HHHPQKNNIA AAAASSGDRL SSPSDDSEFS DSVLKYISQV LMEEDMEEKP CMFHDALALQ 120 AAEKSLYEAL GEQYPSSTSS MDLGGAYPEK LSPDGSFPGF SDYASTTTTT SSDSHWSVDG 180 LENNNRPSWL QTPIPSNFVF QSTSRSNSVT TSGGGGNSAD DLVSRMFKDS ELAMQFKRGV 240 DEASKFLPKS SQLFIDVDSY VPKNSGLDEV SVKTEKRDEA EHPPPPAPSN RLTGKKSHWR 300 DEDSDLVEER SNKQSAVYVE ETELSEMFDK ILLCGGTGQP VCITNQKFQT ESNGGGGGGA 360 KARGKKSTAN DSKKETAADL RTLLVLCAQA VSVDDRRTAS EMLRQIREHS SPLGNGSERL 420 AHYFANSLEA RLAGTGTQIY TALSSKKTSA ADMLKAYQTY ISVCPFKKAA IIFANHSVMR 480 LTADAETIHI VDFGISYGFQ WPALIHRLSF RPGGPPKLRI TGIELPQRGF RPAEGVDETG 540 RRLARYCQRY KVPFEYNAIA QKWETIRVED LKIKEGEFTV VNSLFRFKNL LDETVVVNSP 600 RDAVLKLIRQ VNPNVFIQAV LSGSYNAPFF VTRFREALFH YSALFDMCDS KLSREDEMRL 660 MFEKEFYGRE IMNVVACEGT ERVERPETYK QWQARVIRAG FRQLPVEKEL MQNLKAKIEN 720 GYDKNFDIDQ NGNWLLQGWK GRIVYASSVW VPSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-49 | 387 | 754 | 25 | 381 | Protein SCARECROW |
5b3h_D | 2e-49 | 387 | 754 | 25 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450564.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A3N6RAA3 | 0.0 | A0A3N6RAA3_BRACR; Uncharacterized protein | ||||
STRING | Bo01118s010.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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