PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8923_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 264aa MW: 30289.2 Da PI: 9.9588

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8923_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.6e-21	91	150	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ RrC8923_p2 91 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEQITSQLgkygKIEGKNVFYWFQNHKARERQ 150 7***************99************************************97 PP
2	Wus_type_Homeobox	117.3	6.9e-38	91	152	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq RrC8923_p2 91 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 152 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.349	86	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-12	88	155	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-7	88	155	IPR001356	Homeobox domain
CDD	cd00086	6.86E-5	91	152	No hit	No description
Pfam	PF00046	5.2E-19	91	150	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-8	92	150	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MKVHEFSNGF SSWEQHDSPP SLSLSCKRLR PLAPKLSSSP CSPPPSSSGV TSATFDLKTF 60 IKPDQTCPRK FEYSIDHKRD LPQVETHSGG TRWNPTQEQI GILEMLYKGG MRTPNAQQIE 120 QITSQLGKYG KIEGKNVFYW FQNHKARERQ KQKRNNFISL SCQRSFKKTN INNTSVTTKT 180 TTTSSLEVIK FGLMFVQRDS MVEKGELVEE NEYKRTCRSW GFENLEIDSR RNINSSRNAT 240 MATTFNKIID NVTLELFPLY PEGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449243.1	1e-170	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	1e-129	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1P8YZI9	1e-166	A0A1P8YZI9_RAPSA; WOX4
STRING	Bra014055.1-P	1e-155	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-123	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]