PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC891_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Whirly | ||||||||
Protein Properties | Length: 240aa MW: 26143.8 Da PI: 10.0774 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 204.5 | 1.3e-63 | 60 | 198 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 +++k++aal+v++v+ptf+++d gnl+++r+G++++++++a++erkydWekkq fals+tev++++++++++s+effhdp++k+sn+G+vrk+l+++Pl+ RrC891_p3 60 AIFKGRAALSVEPVLPTFTKIDPGNLRIDRRGSVMMTFMPAVSERKYDWEKKQLFALSPTEVGSVISMGPQDSSEFFHDPSMKSSNAGQVRKSLSIKPLA 159 59************************************************************************************************** PP Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 d +G+f++lsv ++ ++n++++vPvskaefavl+s+++ RrC891_p3 160 DSTGYFFQLSVADNIHNSNDRIVVPVSKAEFAVLKSAFS 198 ************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 6.2E-72 | 49 | 212 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.35E-64 | 52 | 214 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.2E-59 | 61 | 196 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMKQARTLLS RSLCNQSNSL FEGISKSSAS RGLATWADSS STTKRGDTAK PSGRVFAPYA 60 IFKGRAALSV EPVLPTFTKI DPGNLRIDRR GSVMMTFMPA VSERKYDWEK KQLFALSPTE 120 VGSVISMGPQ DSSEFFHDPS MKSSNAGQVR KSLSIKPLAD STGYFFQLSV ADNIHNSNDR 180 IVVPVSKAEF AVLKSAFSFA LPHILGWDRI TGGDVGIAAQ GFASLPKADP MQLELEWGKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 3e-97 | 47 | 212 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 3e-97 | 47 | 212 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 3e-97 | 47 | 212 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 3e-97 | 47 | 212 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013649458.1 | 1e-164 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X2 | ||||
Swissprot | Q8VYF7 | 1e-115 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | M4DI23 | 1e-162 | M4DI23_BRARP; Uncharacterized protein | ||||
STRING | Bra016150.1-P | 1e-163 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12358 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-118 | WHIRLY 2 |