PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8894_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YC
Protein Properties Length: 256aa    MW: 28751.8 Da    PI: 4.7736
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8894_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.31.7e-186861898
       NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                ++++P +rikki+++dedv +i+  +P l+ska elf+ +l   ++  + +   +t++   ++++v+  ++fdfl d+v +
  RrC8894_p3  6 QTRFPATRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTVNSVHLKQCVNAFNVFDFLRDTVSK 86
                789**************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-25271IPR009072Histone-fold
PfamPF008087.7E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.2E-191888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKKKLQTRFP ATRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK  60
TVNSVHLKQC VNAFNVFDFL RDTVSKVPDL GGSEGEDRPA TKRRKLVDES INNDEDIKTS  120
DMHESKDTSG GRGRRGRGRG GYVGRTGNSL SMKLEDDLED VSPEGSMSPS PQNWSLSHEA  180
ASWKEAASHN NNNRNSELKV RDFDLNVELD ENGEFATSPE RQLEERPGWP LFGINEMKID  240
SDQREVSSSE EDYDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469234.11e-167PREDICTED: dr1-associated corepressor
TrEMBLA0A398A7C61e-141A0A398A7C6_BRACM; Uncharacterized protein
STRINGBo2g018090.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139682124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.11e-109NF-YC family protein