PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8888_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 77aa    MW: 8934.21 Da    PI: 10.323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8888_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-151867255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                ++k Vr+++ +g+W AeI+dp     +  +r +lg+f ta++Aa+a++ a+ kl +
  RrC8888_p1 18 KHKDVRQKP-SGKWSAEIWDP-----NlqRRRWLGTFPTAKMAAEAYDDAAAKLVK 67
                7788**999.7*********9.....445999*******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-141870IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-201871IPR001471AP2/ERF domain
SMARTSM003806.2E-181877IPR001471AP2/ERF domain
PROSITE profilePS5103218.2151877IPR001471AP2/ERF domain
PRINTSPR003673.0E-51930IPR001471AP2/ERF domain
PfamPF008473.2E-82266IPR001471AP2/ERF domain
PRINTSPR003673.0E-54157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
GCYGCAFPRH EEIKKEKKHK DVRQKPSGKW SAEIWDPNLQ RRRWLGTFPT AKMAAEAYDD  60
AAAKLVKRKA ERSDTMN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595131.17e-43PREDICTED: ethylene-responsive transcription factor ERF120-like
SwissprotQ9FGC91e-29EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A0D3DGB16e-42A0A0D3DGB1_BRAOL; Uncharacterized protein
STRINGBo7g111100.11e-42(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.11e-19ERF family protein