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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | RrC886_p2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | ERF | ||||||||
| Protein Properties | Length: 242aa MW: 27526.6 Da PI: 4.9277 | ||||||||
| Description | ERF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | AP2 | 58.9 | 1.2e-18 | 80 | 129 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr ++ +g+++AeIrd + k r++lg+f+taeeAa a+++a+ +l+g
RrC886_p2 80 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 129
9*******.**********32..2.24***********************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:3.30.730.10 | 2.6E-30 | 79 | 137 | IPR001471 | AP2/ERF domain |
| PROSITE profile | PS51032 | 22.985 | 79 | 137 | IPR001471 | AP2/ERF domain |
| Pfam | PF00847 | 2.6E-13 | 79 | 129 | IPR001471 | AP2/ERF domain |
| SMART | SM00380 | 1.1E-37 | 79 | 143 | IPR001471 | AP2/ERF domain |
| SuperFamily | SSF54171 | 1.24E-22 | 80 | 139 | IPR016177 | DNA-binding domain |
| PRINTS | PR00367 | 3.8E-11 | 80 | 91 | IPR001471 | AP2/ERF domain |
| CDD | cd00018 | 6.01E-30 | 80 | 139 | No hit | No description |
| PRINTS | PR00367 | 3.8E-11 | 103 | 119 | IPR001471 | AP2/ERF domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009723 | Biological Process | response to ethylene | ||||
| GO:0009753 | Biological Process | response to jasmonic acid | ||||
| GO:0009861 | Biological Process | jasmonic acid and ethylene-dependent systemic resistance | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 242 aa Download sequence Send to blast |
MEYQTSFFYE NQSQEFSPEN SCSTNSWSSQ ESFLWEESFL HDQSFLSFSS SYDDFFTFES 60 SLIKEEVEDT VVAEEEERSY RGVRKRPWGK YAAEIRDSTR KGIRVWLGTF DTAEEAALAY 120 DQAAFALKGD LAVLNFPVNV VKESLQKMEN VNLNGGESPV IALKRKHSMR NRPRGKKKSS 180 PSSSSSSSSS SRSSIQSLAT KQEILLLSDF GRAVMGMLEV YRQWSTVALL LESMYYELSS 240 TK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5wx9_A | 1e-27 | 76 | 137 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene. {ECO:0000269|PubMed:18467450}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00023 | PBM | Transfer from AT1G06160 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | EU921649 | 1e-115 | EU921649.1 Brassica oleracea var. gemmifera ethylene-responsive factor mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018489119.1 | 1e-134 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
| Swissprot | Q9LND1 | 3e-68 | ERF94_ARATH; Ethylene-responsive transcription factor ERF094 | ||||
| TrEMBL | A0A397Y822 | 1e-112 | A0A397Y822_BRACM; Uncharacterized protein | ||||
| TrEMBL | M4EUF1 | 1e-112 | M4EUF1_BRARP; Uncharacterized protein | ||||
| STRING | Bra032433.1-P | 1e-113 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM3990 | 18 | 59 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G06160.1 | 5e-51 | octadecanoid-responsive Arabidopsis AP2/ERF 59 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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