PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8861_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 520aa    MW: 56443.5 Da    PI: 8.2674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8861_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.9e-30217276159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  RrC8861_p1 217 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 276
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31202278IPR003657WRKY domain
SuperFamilySSF1182901.96E-27210278IPR003657WRKY domain
PROSITE profilePS5081128.69212278IPR003657WRKY domain
SMARTSM007741.5E-36217277IPR003657WRKY domain
PfamPF031066.2E-27218276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDVLLKLPTS NSLRTVKDLG SAQIHEAIKG DGDHQELESA KAEMSEVKEE NEKLKRMLKR  60
IESDYKSLKL RFFDVFQQEP SNKPTQDQNV VDFRTDLSSF DQEGELVSLS LGRRSSSPSD  120
NTSNKEEKAD VITKVVKSDE ELTKAGLALG FNNSNGREQN ESLSIVNSSE EANKVTGKRS  180
SPAPPDSDGD ADGEAGQQNN VKRARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY  240
YRCTVAPGCP VRKQVQRCAE DMSILITTYE GTHSHPLPLS ATTMASTTSA AASMLLSGSS  300
SSSAAKMIGN NLYDSSRFIN NNNRKSFYAP TLHSPLHPTV TLDLTAPQHY TSTSLPSLNF  360
NKFSNSLQRF PSASLNFSSS SSYTPYPYNN VQFGPSNLGK TVQNSQSLTE TLTKALTSDP  420
SFHSVVAAAI SSMVGSNGEQ QIVGSRHPNS NSIQQTAATN DNKGRGGYFS SLLASNIIAN  480
NQTGAFLDQP SSQLPPLSMF KHPSSSSTTA SFVNKDEKSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21204278174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892320.0AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659902.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLM4E4020.0M4E402_BRARP; Uncharacterized protein
STRINGBra023505.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72