PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8816_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 361aa    MW: 39832.4 Da    PI: 5.8291
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8816_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.4e-32189243155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr+rW+peLH++F+eav++L G+ekAtPk+++++m+v+gLt+++vkSHLQkYRl
  RrC8816_p3 189 KPRMRWSPELHDCFLEAVKKLDGPEKATPKAVMKMMNVEGLTIYQVKSHLQKYRL 243
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-30187244IPR009057Homeodomain-like
SuperFamilySSF466896.09E-18188244IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25189244IPR006447Myb domain, plants
PfamPF002492.5E-10191242IPR001005SANT/Myb domain
PfamPF143791.6E-21280326IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNSHSLFLSI NDGGNTTCCS SSSLASLHSE TTRSFPFRPS HFSNGSSFSR SSAFCNLSSS  60
SSSDTKKHLG STLPFLPNPS PAAASFTFTE EDLLSFSFEE VVDTSFLALS GDGGFQDVVD  120
NFSLSEEQME LQFLSDELQL AITDRGETPR LDEIYQVTGL SPGQNGLPTA MPVLSQQPSP  180
GESAAVNQKP RMRWSPELHD CFLEAVKKLD GPEKATPKAV MKMMNVEGLT IYQVKSHLQK  240
YRLAKNMPER KEEKKSSGSS EDKKPASDTS EANGKKKGAI QLTEALRMQM EVQKQLHQQL  300
EVQRSLQLRI EEHARYLQKI LDEQSKAAAT SKQDSHLSSS AEVDECETSL KRPRLENSTS  360
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-22189245258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485277.10.0PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U21e-108PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A397YT330.0A0A397YT33_BRACM; Uncharacterized protein
STRINGBra038033.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1913667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.26e-98G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]