PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8781_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 227aa    MW: 25828.3 Da    PI: 8.9178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8781_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd +lv +++++G g+W+t +++ g+ R +k+c++rw++yl
       RrC8781_p1 14 KGEWTSEEDRILVAYINEYGLGDWRTLPKRAGLQRYGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding54.72.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E++ +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
       RrC8781_p1  67 RGKFTPQEEDDIIRFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.199961IPR017930Myb domain
SuperFamilySSF466891.95E-2911108IPR009057Homeodomain-like
SMARTSM007179.9E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-221568IPR009057Homeodomain-like
CDDcd001672.75E-91661No hitNo description
PROSITE profilePS5129425.26662116IPR017930Myb domain
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.9E-1667111IPR001005SANT/Myb domain
CDDcd001674.70E-1069109No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRTTWLDDD GLKKGEWTSE EDRILVAYIN EYGLGDWRTL PKRAGLQRYG KSCRLRWLNY  60
LRPGIKRGKF TPQEEDDIIR FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRRG  120
IDPMTHEPVV KATSSSTMLS PTLTPSSCSS SFSSTSSARL LNRLAAGISS RKHGLDRIKN  180
VILSKPRQAV EEDKLMISSN EEEEEVTGCF MEIDDNLIST TSLDELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382850.0KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445390.11e-165PREDICTED: transcription factor MYB34-like
SwissprotQ9LE636e-60MY106_ARATH; Transcription factor MYB106
TrEMBLA0A397YNY71e-126A0A397YNY7_BRACM; Uncharacterized protein
STRINGBra003801.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-104myb domain protein 95