PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC877_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 143aa MW: 16379.2 Da PI: 10.5496 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 43.2 | 1.1e-13 | 13 | 96 | 2 | 89 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F +ly+i++d++ +++isws +n+nsfvv+d +++ +++L k +n+ F+ +L gFk v + ++ eF+h+ F+++ RrC877_p5 13 FYIQLYQIVDDRSSDQIISWSkTNNNSFVVWDLKRLRSNILLKssSVLGKNLPEFMAKLRSHGFKTVFKGPGE-------LEFSHDDFTRD 96 899******************9999***************9663367789******************99998.......9*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.3E-15 | 8 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-9 | 9 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.08E-12 | 10 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.2E-5 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.2E-11 | 13 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-5 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MVCKLPAGSS SSFYIQLYQI VDDRSSDQII SWSKTNNNSF VVWDLKRLRS NILLKSSSVL 60 GKNLPEFMAK LRSHGFKTVF KGPGELEFSH DDFTRDPLMK KMMAKALSEK IESFDAQIKT 120 LKCRLKAKKA SIKVENLFQN LRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479641.1 | 1e-93 | PREDICTED: heat stress transcription factor A-5-like | ||||
TrEMBL | A0A078HHE2 | 7e-84 | A0A078HHE2_BRANA; BnaC04g32170D protein | ||||
TrEMBL | A0A0D3C016 | 7e-84 | A0A0D3C016_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g139630.1 | 1e-84 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 8e-29 | Winged helix-turn-helix transcription repressor DNA-binding |