PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8778_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 157aa MW: 17878 Da PI: 6.6733 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 173 | 3.3e-54 | 46 | 142 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ++eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisf+t+easdkc++ekrkt+ngdd++wa+a+lGf+dy+e+lk+yl++yr +ege+ RrC8778_p1 46 MKEQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFITGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAEQLKKYLNRYRVTEGER 142 589*******************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-53 | 39 | 149 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.47E-39 | 49 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.8E-28 | 52 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.7E-19 | 80 | 98 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 83 | 99 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.7E-19 | 99 | 117 | No hit | No description |
PRINTS | PR00615 | 1.7E-19 | 118 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MAGNYPSFQN PIPRFQNFNF ASSSSHHQNH DGLVVEDQQQ EENMMMKEQD RLLPIANVGR 60 IMKNILPPNA KISKEAKETM QECVSEFISF ITGEASDKCH KEKRKTVNGD DICWAMANLG 120 FDDYAEQLKK YLNRYRVTEG ERVNQHGKGG AKSPPDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-45 | 46 | 136 | 1 | 91 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-45 | 46 | 136 | 1 | 91 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787665 | 1e-171 | KC787665.1 Brassica napus transcription factor subunit NF-YB5 (NF-YB5) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474925.1 | 1e-111 | PREDICTED: nuclear transcription factor Y subunit B-5 | ||||
Swissprot | O82248 | 1e-99 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A3P6AAA9 | 1e-106 | A0A3P6AAA9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g039790.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 1e-90 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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