PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC875_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 317aa MW: 35184.1 Da PI: 9.5056

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC875_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	30	1.7e-09	207	229	35	58
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 py+h+SRh h +rRpRgsgGrF RrC875_p3 207 AEPYMHHSRHLH-MRRPRGSGGRF 229 679*******.9*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	10.919	200	232	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.4E-7	205	229	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MPLPRNLKLS LSLSHTPSRV NISFILATSY RDFFPLSSIF VYCILEMDMQ TVKESLLSAP 60 QIPWWNAFGS QPLAPVSLAG DSDSFHVGHA GETEHGVDKQ SNSASHLAFS LGVKSSIDVL 120 KPHAAAFSMQ PLCLELDLHK VSLRATRTLW SCCFSLWISE QRNASSKHGN RRWNNLGRLK 180 AIPWYHKATP VPCKRLLLFL IRSDSVAEPY MHHSRHLHMR RPRGSGGRFL NTKSKKADET 240 KQTHPQPQQS NSQSFEVLHP ESGIMNLSNG VNVSGSEVTS MNYFLSSSVH PLGGGMVVPS 300 KWFEAAAVDN GCCSFNT

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013696108.1	1e-100	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-2
Swissprot	Q9M9X4	3e-86	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A3P5ZNG6	3e-89	A0A3P5ZNG6_BRACM; Uncharacterized protein
STRING	XP_010430951.1	1e-86	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-88	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]