PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8755_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 668aa    MW: 75333.4 Da    PI: 6.6966
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8755_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.22.1e-1152946631374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+ k+s++++N
  RrC8755_p1 294 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFITN 389
                 689***************************************************************9999...999*********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I + v ++ rvH+iDf+i +G+QWp+L++ ++    g+p++R+Tg++ p++g   ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L++
  RrC8755_p1 390 KTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGKPKVRVTGIEFPQPGfrPAQRVEETGQRLAAYAKQFGVPFEYKA-IAKKWDAVQLEDLDI 485
                 **********************************8..8***************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++fd+le+ +pre+eer+++E e++gre+ 
  RrC8755_p1 486 DRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREAL 584
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+aceg er+er et+++W+ r +++G+ +vp++++++k+  + ++k++ + + +++++ +l++gWk+r+++++S+W+
  RrC8755_p1 585 NVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDQDIMKKSLHKVNKFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 663
                 **************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.808268643IPR005202Transcription factor GRAS
PfamPF035147.3E-113294663IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MITDPSPVDL TRLPDQPPSL TLFDGYNYNH HHHPLSNNNN QNAFATMTSS EEDPADEFDF  60
SDAVLGYISQ ILMEEDMDDR VCMLQESLDL EAAERSLYEA IGKKYPPSPE RSSPPYVENL  120
DHVVPAGDRT GFGGGIRPAS GGGGGFTLDF RNPQSLCSPV LSVPQSPYGV HESYGDDDQS  180
VWLFRRGVEE EDGERNEMVV NFKGRRNPNR DDEERCSKLP AVFSETILKS DVVDKILVHV  240
PGEESMKEFD ALREVLKKGV GKKKASAPQE GKRRARGRGR GRGGGGVKKE VVDLRSLLIH  300
CAQAVAADDS RCAGQLLKQI RQHSTPFGDG NQRLAHCFAN GLEARLAGTG SQIYKGIVSK  360
PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSP RVHVIDFGIL YGFQWPTLIH  420
RFSIYGKPKV RVTGIEFPQP GFRPAQRVEE TGQRLAAYAK QFGVPFEYKA IAKKWDAVQL  480
EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDAVLSLI GKINPDLFVF GIVNGAYNAP  540
FFVTRFREAL FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET  600
YKQWHVRAMR SGLVQVPFDQ DIMKKSLHKV NKFYHKDFVI DQDNRWLLQG WKGRTVMALS  660
VWKPESKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-4430066624381Protein SCARECROW
5b3h_D5e-4430066624381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273282RARGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472836.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_018472840.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D3B5G30.0A0A0D3B5G3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AC640.0A0A3P6AC64_BRAOL; Uncharacterized protein
STRINGBo3g031890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein