PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC872_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 397aa MW: 45130.8 Da PI: 7.8382

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC872_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 l pGfrFhPtdeelv++yL++kve+++l++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d++++s+ +++ RrC872_p2 15 LLPGFRFHPTDEELVSFYLRRKVEHRPLSI-KLITQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTSAGFWKATGTDRPIYSSeGSKC 113 579*************************.89***********7777889***********************************956677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +gl+k+Lvfykgra kg+ktdW+mhe+rl RrC872_p2 114 IGLRKSLVFYKGRAAKGVKTDWMMHEFRL 142 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-59	11	177	IPR003441	NAC domain
PROSITE profile	PS51005	57.514	15	177	IPR003441	NAC domain
Pfam	PF02365	2.0E-25	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MGENNGEAKK MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL 60 PKFAMTGEKE WYFYCPRDRK YRNSSRPNRV TSAGFWKATG TDRPIYSSEG SKCIGLRKSL 120 VFYKGRAAKG VKTDWMMHEF RLPSSSTHTL SDTPLSPNVS KIFFDKDSWA ICRIFRKTNT 180 TALKATSHSF ASSLPKEGST DTEPYEKPSN TPHIYPENIL ENSVSFNFYK KNMNVTKPPR 240 SYYDEKEATK TCTCTTTTPF SYMDFASPAS PGPCLDEQYL RSLLLASQET QPPQLPKVMD 300 NNDISSFLLN MSSSESSFLG GYTNQIGSSI DLTTAILAQE QCPALVNLSQ GYQDHQAFSH 360 TLEFGHLTSA STSVGDQHQN QKHHMLMESY YSVNLLN

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MGENNGEAKK MEDVLLPGFR FHPTDEELVS FYLRRKVEHR PLSIKLITQL DIYKYDPWDL  60
PKFAMTGEKE WYFYCPRDRK YRNSSRPNRV TSAGFWKATG TDRPIYSSEG SKCIGLRKSL  120
VFYKGRAAKG VKTDWMMHEF RLPSSSTHTL SDTPLSPNVS KIFFDKDSWA ICRIFRKTNT  180
TALKATSHSF ASSLPKEGST DTEPYEKPSN TPHIYPENIL ENSVSFNFYK KNMNVTKPPR  240
SYYDEKEATK TCTCTTTTPF SYMDFASPAS PGPCLDEQYL RSLLLASQET QPPQLPKVMD  300
NNDISSFLLN MSSSESSFLG GYTNQIGSSI DLTTAILAQE QCPALVNLSQ GYQDHQAFSH  360
TLEFGHLTSA STSVGDQHQN QKHHMLMESY YSVNLLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-54	15	181	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-54	15	181	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-54	15	181	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-54	15	181	17	169	NO APICAL MERISTEM PROTEIN
4dul_A	9e-54	15	181	17	169	NAC domain-containing protein 19
4dul_B	9e-54	15	181	17	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	1e-174	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453435.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-153	FEZ_ARATH; Protein FEZ
TrEMBL	A0A3P6BHA3	0.0	A0A3P6BHA3_BRACM; Uncharacterized protein
STRING	Bra004403.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-144	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]