PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC864_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 344aa    MW: 38683.5 Da    PI: 4.6881
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC864_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.73.4e-4761341129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l pGfrFhPtd elv +yLk+kv gkk+++ ++i+e+diyk+eP dLp k ++++++ +wyfF++r kky++g ++nr+t+sgyWk+tgkd++v+  ++e
  RrC864_p3   6 LEPGFRFHPTDVELVRYYLKRKVLGKKFKT-NAIAELDIYKFEPPDLPeKsCLRTGDLKWYFFCPRLKKYPNGGKANRSTESGYWKTTGKDRDVTY-NDE 103
                579**************************9.89**************95357788889**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                +vg  +tLvf+ g++p+ge+tdWv+heyrle
  RrC864_p3 104 VVGKIRTLVFHYGKTPRGERTDWVIHEYRLE 134
                *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-554156IPR003441NAC domain
PROSITE profilePS5100553.2656156IPR003441NAC domain
PfamPF023652.5E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVKNSLEPGF RFHPTDVELV RYYLKRKVLG KKFKTNAIAE LDIYKFEPPD LPEKSCLRTG  60
DLKWYFFCPR LKKYPNGGKA NRSTESGYWK TTGKDRDVTY NDEVVGKIRT LVFHYGKTPR  120
GERTDWVIHE YRLEDRTLVQ RNIPQDTYVI CKLFKKKGLG PRHGSEYGAP FKDEDWSDEE  180
DIESLVAIPD PGPTKETSVV ASASHSHPPE DCITRVISES CVSGVPQLTA TMLPPLASDA  240
VAHTPLSSSS PLVEVPHAVQ DDDDFYSMLD LFVVDSDESL PLDGFNNQYE VRHETEVPVV  300
EEAPVSLEDI DLSWMQGDEL FIGIEELIEP PTLPAAQAGH PGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-45515714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382770.0KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488475.10.0PREDICTED: NAC domain-containing protein 82 isoform X2
SwissprotQ9FY821e-115NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A397Z7810.0A0A397Z781_BRACM; Uncharacterized protein
STRINGBra024263.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-138NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]