PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8637_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 417aa    MW: 47337 Da    PI: 6.5562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8637_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.7e-51541792128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++++ +
  RrC8637_p1  54 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRPI 151
                 79***************************.89***************888889********************************************** PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy+g+apkg++t+W+m+eyrl
  RrC8637_p1 152 GLKKTLVFYSGKAPKGTRTSWIMNEYRL 179
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.27253200IPR003441NAC domain
SuperFamilySSF1019411.2E-5653200IPR003441NAC domain
PfamPF023653.1E-2555179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAIVSSTTSI TTMSNQVNNN NNEKDIEEDT HGGGHESRAR NDDEADDHDH DMVMPGFRFH  60
PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA MAAIGEKEWY FYVPRDRKYR  120
NGDRPNRVTT SGYWKATGAD RMIRSETSRP IGLKKTLVFY SGKAPKGTRT SWIMNEYRLP  180
HHETEKYQKA EISLCRVYKR PGVEDHPSLP RSLSTRHHNH NSASSSSRLA LRQQHQHHSS  240
SSNHSDNNLN NNSNNNISNN LDKLSTEYSG DGSTTTTTNS NSDVTIALAN QNIYRPMPYG  300
ASNTPIVSTT NQEDDETAIV DDLQRLVNYQ ISDGVNINHQ YYQIAQQFHN QQLSANANAL  360
QLVAAATTAA LTPQTQAALA MNMIPAGTIP NNPLWDMWNP LVPDHGNKDH YTDTPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-57442008165NO APICAL MERISTEM PROTEIN
1ut4_B7e-57442008165NO APICAL MERISTEM PROTEIN
1ut7_A7e-57442008165NO APICAL MERISTEM PROTEIN
1ut7_B7e-57442008165NO APICAL MERISTEM PROTEIN
3swm_A8e-574420011168NAC domain-containing protein 19
3swm_B8e-574420011168NAC domain-containing protein 19
3swm_C8e-574420011168NAC domain-containing protein 19
3swm_D8e-574420011168NAC domain-containing protein 19
3swp_A8e-574420011168NAC domain-containing protein 19
3swp_B8e-574420011168NAC domain-containing protein 19
3swp_C8e-574420011168NAC domain-containing protein 19
3swp_D8e-574420011168NAC domain-containing protein 19
4dul_A7e-57442008165NAC domain-containing protein 19
4dul_B7e-57442008165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0008740.0BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101257.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A397ZA570.0A0A397ZA57_BRACM; Uncharacterized protein
STRINGBra024818.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.20.0NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]