PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC85_p14
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 79aa    MW: 9176.24 Da    PI: 9.5504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC85_p14genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.9e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a + +  +   +W  +ar +g g+++++++ ++ 
        RrC85_p14 11 SWTRKENKLFERALAIYDQDtpdRWLHVARAVG-GKSAEEVRRHYE 55
                     6******************9*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-13461IPR009057Homeodomain-like
PROSITE profilePS5129310.707762IPR017884SANT domain
SMARTSM007171.9E-8860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-51164IPR009057Homeodomain-like
PfamPF002494.2E-71155IPR001005SANT/Myb domain
CDDcd001671.29E-61258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSMSSNA SWTRKENKLF ERALAIYDQD TPDRWLHVAR AVGGKSAEEV RRHYELLVRD  60
INDIELGRYP HPTYRSNGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-28178177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893731e-103AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469839.12e-50PREDICTED: protein RADIALIS-like 3
RefseqXP_018469852.12e-50PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN02e-40RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A078JFW48e-47A0A078JFW4_BRANA; BnaA01g34510D protein
TrEMBLA0A398APM98e-47A0A398APM9_BRACM; Uncharacterized protein
TrEMBLM4D5D48e-47M4D5D4_BRARP; Uncharacterized protein
STRINGBra011691.1-P1e-47(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-32RAD-like 1