PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC859_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | BES1 | ||||||||
Protein Properties | Length: 208aa MW: 22922.5 Da PI: 9.8622 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 78 | 2.8e-24 | 77 | 125 | 1 | 49 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnne 49 gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+ RrC859_p1 77 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMND 125 689*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.4E-22 | 78 | 125 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MHTLNTTTTG SQDPIDPNRN LDPDQYPHHR NPNHPQSRRP RGFAATAAAA SMGQADSDVN 60 NGNITGETSS GGGGGGGGKG KREREKEKER TKLRERHRRA ITSRMLAGLR QYGNFPLPAR 120 ADMNDFPTRS IESPLSSTTL KKAALDCPQH PSLRIDENLS PVSLDSVVIA ESGDGISRVW 180 RECIWKCYDL VTTVGFGDWK KQSRHILH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442032.1 | 9e-78 | PREDICTED: beta-amylase 8 isoform X2 | ||||
Swissprot | Q9FH80 | 8e-43 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A3P6ASJ0 | 7e-68 | A0A3P6ASJ0_BRACM; Beta-amylase | ||||
STRING | Bo2g127050.1 | 1e-65 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10888 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 1e-38 | beta-amylase 2 |
Publications ? help Back to Top | |||
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