PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8582_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 407aa MW: 42833.9 Da PI: 9.3388

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8582_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.5e-38	91	150	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nny+l+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++ RrC8582_p1 91 ETALKCPRCDSTNTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 150 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-36	74	143	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-32	93	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MVFSSFPNYS DSSNWQQQHQ PITTTVGFTG NNISQQFLPH HPLPPQPQQT PPPLHHNGNG 60 GGGGGPGGPG GLIRPGSMAE RARLANIPLP ETALKCPRCD STNTKFCYFN NYNLTQPRHF 120 CKACRRYWTR GGALRSVPVG GGCRRNKRTK NSGGGGGSSS SGNSKSQDST TSNDQYHHRA 180 LSNNQMGPPS SSTSLSSLLS SYNAGLIPGH DHNSNNNNIL GLGSSLSPLK LMHPLDFTDN 240 FTLQYGAVSA PSYHTGGGSS GGNGGGGASA ILTGLDQWRF PATHHQLPLL GGLDSSSSSG 300 LYPFDQNPGY GLVTGSGQYR PKNIFHNLVS SSSSSSASSA MVTATASQLA SVKMEDSNNQ 360 LNMSRQLFGN EQELWNIHGT AVSTAAATTS SWSDVSNNFS SSSTSNI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MVFSSFPNYS DSSNWQQQHQ PITTTVGFTG NNISQQFLPH HPLPPQPQQT PPPLHHNGNG  60
GGGGGPGGPG GLIRPGSMAE RARLANIPLP ETALKCPRCD STNTKFCYFN NYNLTQPRHF  120
CKACRRYWTR GGALRSVPVG GGCRRNKRTK NSGGGGGSSS SGNSKSQDST TSNDQYHHRA  180
LSNNQMGPPS SSTSLSSLLS SYNAGLIPGH DHNSNNNNIL GLGSSLSPLK LMHPLDFTDN  240
FTLQYGAVSA PSYHTGGGSS GGNGGGGASA ILTGLDQWRF PATHHQLPLL GGLDSSSSSG  300
LYPFDQNPGY GLVTGSGQYR PKNIFHNLVS SSSSSSASSA MVTATASQLA SVKMEDSNNQ  360
LNMSRQLFGN EQELWNIHGT AVSTAAATTS SWSDVSNNFS SSSTSNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189646	0.0	AC189646.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS009G14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453553.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56	1e-166	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	A0A3P5ZX96	0.0	A0A3P5ZX96_BRACM; Uncharacterized protein
STRING	Bra028872.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-126	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]