PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8501_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 118aa MW: 13289.9 Da PI: 9.1631 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 14 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr ++ +g+Wv+eIr p++ r r++lg+++t+e+Aa+a +aa +l+g RrC8501_p1 14 SKYKGVRKRR-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 64 89*****887.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-12 | 14 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-21 | 14 | 73 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.023 | 15 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-29 | 15 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-32 | 15 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 16 | 27 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.54E-24 | 18 | 73 | No hit | No description |
PRINTS | PR00367 | 6.6E-10 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEEGPSSSSS SMKSKYKGVR KRRWGKWVSE IRLPNSRERI WLGSYDTPEK AARAFDAALF 60 CLRGSGASFN FPEKPPVISG WQNMSRSEIR EAAARFANAE ETSVAGREEK EESEELVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-17 | 1 | 80 | 1 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435384.1 | 8e-63 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 2e-55 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A397YB54 | 5e-54 | A0A397YB54_BRACM; Uncharacterized protein | ||||
STRING | Bra025719.1-P | 2e-54 | (Brassica rapa) | ||||
STRING | Bra031069.1-P | 7e-54 | (Brassica rapa) | ||||
STRING | Bo8g102870.1 | 5e-54 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-41 | ERF family protein |
Publications ? help Back to Top | |||
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