PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC845_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 134aa    MW: 15331.6 Da    PI: 12.0629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC845_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19657156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g+
  RrC845_p4  6 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRGP 57
               79*****999.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.97E-25666No hitNo description
PfamPF008473.4E-12656IPR001471AP2/ERF domain
SMARTSM003801.1E-30770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-29765IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-21766IPR016177DNA-binding domain
PROSITE profilePS5103221.773764IPR001471AP2/ERF domain
PRINTSPR003671.4E-9819IPR001471AP2/ERF domain
PRINTSPR003671.4E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEASLPKYTG VRKRKWGKWV AEIRLPNSRE RIWLGSFDSA EKAARAFDAA LYCLRGPGAR  60
FNFPDNPPEI PGGRSLTPQQ IQLTVSAARN RYHHRSSNNN NKNNNRRHMA IGWRRKKGKF  120
QHVGKLVVVV VGLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-173641072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409772e-76AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898832e-76AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608662e-76AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115772e-76BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122432e-76BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026882e-76CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445254.11e-54PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5912e-52ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A3P6EKS02e-52A0A3P6EKS0_BRAOL; Uncharacterized protein
STRINGBra002377.1-P7e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-54ERF family protein