PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC841_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 233aa    MW: 26304.4 Da    PI: 5.0817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC841_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-194596156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               s ykG+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+l+g+
  RrC841_p6 45 SEYKGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRLRGA 96
               569*******.**********72....46**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-2245104IPR016177DNA-binding domain
CDDcd000181.98E-3045104No hitNo description
Gene3DG3DSA:3.30.730.109.9E-3146104IPR001471AP2/ERF domain
PfamPF008479.3E-134695IPR001471AP2/ERF domain
SMARTSM003803.3E-3646109IPR001471AP2/ERF domain
PROSITE profilePS5103223.86846103IPR001471AP2/ERF domain
PRINTSPR003678.1E-114758IPR001471AP2/ERF domain
PRINTSPR003678.1E-116985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCGGAVISDY IAPPRSTGVT ANQLWSAGMK REDGKRRRRK KSISSEYKGI RRRPWGRWAA  60
EIRDPIKGVR VWLGTFNTAE DAARAYDLEA KRLRGAKAKL NFPNESSSRK RKASSSSLQP  120
PQQQPQVQKI EEEEEDLGGC LDFLWEENNN EDTTQVDTQW LEDVILGDAA EKRQKGCYDC  180
GADVNGLLSD ELLAFENQTE CFSQMPFMER RNCGSSTSLS SLLDEVNVMD LWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2146103563ATERF1
3gcc_A2e-2146103563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439KRRRRK
23440KRRRRKK
33452KRRRRKKSISSEYKGIRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457825.11e-126PREDICTED: ethylene-responsive transcription factor ERF073-like
RefseqXP_018457836.11e-126PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T58e-78ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A0D3D0391e-104A0A0D3D039_BRAOL; Uncharacterized protein
STRINGBo6g115850.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-77ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]