PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8401_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 438aa    MW: 47017.2 Da    PI: 6.2747
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8401_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.5e-39117176261
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  RrC8401_p1 117 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 176
                 7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-32113174IPR003851Zinc finger, Dof-type
PfamPF027018.5E-32119175IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.64121175IPR003851Zinc finger, Dof-type
PROSITE patternPS013610123159IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSDPAIKLFG KTIPLPELVG EQQDQNPVRL SDSCTGDDEE MGDSGLAGGG DGGGDSESQK  60
EEKDAECGEE SLCNESSNVG AAASSITEKT ETTKAAKTDE ESSQNGTCSQ EAKLKKPDKI  120
LPCPRCNSME TKFCYYNNYN VNQPRHFCKK CQRYWTAGGT MRNVPVGAGR RKNKNPASHF  180
NRHVTITSAE AMQKAAAART ADNGTSLLTF GSDSVLCESM ASGLNLADKS LLKKTQTGSQ  240
EGLKITVPLN PSKEAGTVSP LPCFPGPPPP PPTWPYAWNG VSWTAVPFYP PPAYWSYPGV  300
SPGTWNSITW MPQPTSPSGG GSGPNSPTLG KHSREESVAE PGTAVEETES HGREKSKSER  360
CLWVPKTLRI DDPEEAAKSS IWETLGIKKD EKADTFGAFR SPNKEKSSLS QGKLPGRRPE  420
LQANPAALSR SANFHESS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478783.10.0PREDICTED: cyclic dof factor 2
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A0D2ZPT10.0A0A0D2ZPT1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CT210.0A0A3P6CT21_BRAOL; Uncharacterized protein (Fragment)
STRINGBo00578s060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]