PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8372_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 228aa    MW: 25847.4 Da    PI: 9.533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8372_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1528120197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ffk++  +d +++++  +p +f+++  ++   s+ ++++++ g sWevk+  + +++  y+ ++GW++Fv++n L  ++ v+F+++g ++f  +v ++
  RrC8372_p1  28 FFKIFHGEDLSSESMRAFPYDFIRNVPQD-DFSTNMVIRTQCGLSWEVKV--SMNPCFyYMEKRGWNQFVNDNALGNKELVTFTHTGLMCF--NVNIY 120
                 89999999999************877444.48899***************..999999566669********************9988999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-1624126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1524124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-1327120No hitNo description
PfamPF023627.6E-1428120IPR003340B3 DNA binding domain
PROSITE profilePS5086311.63228123IPR003340B3 DNA binding domain
SMARTSM010191.5E-1428123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMFPKERERG SSSGLGQGGE VDVENLSFFK IFHGEDLSSE SMRAFPYDFI RNVPQDDFST  60
NMVIRTQCGL SWEVKVSMNP CFYYMEKRGW NQFVNDNALG NKELVTFTHT GLMCFNVNIY  120
EENGKEVVTP RRRPRTMASL SGIKKEVGES SNKDVKTGEI KKEVGESSNK DVKKAEEIAE  180
SKRGAKFKSK RSEGAETSKK KKMKSNNVEH TVPVFSVTLT ASYLKFLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135PRRRPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433189.11e-140PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP65e-53Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3P6GI561e-114A0A3P6GI56_BRAOL; Uncharacterized protein
STRINGBra018430.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.12e-55B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]