PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8367_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 572aa    MW: 64149.2 Da    PI: 4.7568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8367_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.53.9e-1332025723374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   ++e+laa+++++ev+P++kf++l+aN a
  RrC8367_p2 202 QILISCARALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---TDERLAAMQVLFEVCPCFKFGFLAANDA 297
                 78*****************************************************************9...9*************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 I e++ gee+vHiiDfdi+qG Q+++L+++ ++ p +g p+lR+Tgv++pes+  s   l+ +g rL+++A+  gv+fef++ va++++ +++++L +k
  RrC8367_p2 298 IIESIRGEEEVHIIDFDINQGNQYMTLIRTVSELPcKGRPRLRLTGVDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFEFKA-VASKTNIVSPSTLGCK 395
                 ***********************************9***************9989999************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F++rf+ea eyysa+fdsl+++lpres+er++vEr++l+r+ivn
  RrC8367_p2 396 QGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFTRFMEAYEYYSAVFDSLDMTLPRESQERMNVERQCLARDIVN 494
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vaceg+er+er e ++kWr+r+++aGF+p p+s ++a++++ l++k +   y++ ee g+l ++W+d++L+++SaWr
  RrC8367_p2 495 IVACEGEERIERYEVAGKWRARMMMAGFSPRPMSGRVASNIQNLIKKDYCSKYTLREEMGELHFCWEDKSLIVASAWR 572
                 *************************************************666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.211174552IPR005202Transcription factor GRAS
PfamPF035141.3E-130202572IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSLVRSAELS AAAAYRNPKL YSLNENNGYN TSSGGGTTSV EIFDPDRSKN TCLTDDSYPS  60
QSYEKYFLDS PTTDEFAQQH PVTSGASVSS FGSLESFPYQ SRPVLGCSME YQLPFGGYQA  120
GGLSPTSMEF DDEQMRSKIQ ELERALLSDD DDKMEGLDQL MEIDNEWSSY QKHHDSPKES  180
SSEDSNSHAS SKEVVSSQTP KQILISCARA LSEGKSEEAL SMVNELRQIV SIQGDPSQRI  240
AAYMVEGLAA RMAASGKFLY RALKCKEPPT DERLAAMQVL FEVCPCFKFG FLAANDAIIE  300
SIRGEEEVHI IDFDINQGNQ YMTLIRTVSE LPCKGRPRLR LTGVDDPESV QRSVGGLRII  360
GLRLEQLAKD HGVSFEFKAV ASKTNIVSPS TLGCKQGETL IVNFAFQLHH MPDESVTTVN  420
QRDELLHMVK SLNPKLVTVV EQDVNTNTSP FFTRFMEAYE YYSAVFDSLD MTLPRESQER  480
MNVERQCLAR DIVNIVACEG EERIERYEVA GKWRARMMMA GFSPRPMSGR VASNIQNLIK  540
KDYCSKYTLR EEMGELHFCW EDKSLIVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5720757125377Protein SCARECROW
5b3h_D2e-5720757125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435602.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A078IH380.0A0A078IH38_BRANA; BnaA06g15170D protein
STRINGBo5g034360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]