PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8304_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 303aa    MW: 33632 Da    PI: 8.1701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8304_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.3e-1757107155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  RrC8304_p1  57 TRYRGVRRRP-WGRYAAEIRDPA----SkERRWLGTFDTAEEAACAYDCAARAFRG 107
                 68********.**********83....25999********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.81E-3057114No hitNo description
PfamPF008473.9E-1057107IPR001471AP2/ERF domain
PROSITE profilePS5103222.64258115IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2158116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-2958115IPR001471AP2/ERF domain
SMARTSM003804.0E-3358121IPR001471AP2/ERF domain
PRINTSPR003671.5E-95970IPR001471AP2/ERF domain
PRINTSPR003671.5E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEEALRKFSE STRSLITGYE PDHNLLTRNF TNTKPLNRKP ASKETRVTSL GTGSAPTRYR  60
GVRRRPWGRY AAEIRDPASK ERRWLGTFDT AEEAACAYDC AARAFRGSKA RTNFTYPVAL  120
AVPVPEHRFS FFPKKSSARP PVPLDHSSTQ EFYGTPAPQK INNDASYSSR KTAPFYSFNG  180
SSSYSEPKTA SISSSANDYD TEFFPQESSD SGLLQEVVKE FLKKNRNQSP PPPVIGHLEN  240
TGDLSALSNS FLQQKTEPIT SMLEGYGNNS HAGDFGYFDG VSPAADSDFT YGSEAWGYQD  300
MLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1951124781Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489120.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
RefseqXP_018489384.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
SwissprotQ9SAD42e-93ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLA0A3P5YDR11e-170A0A3P5YDR1_BRACM; Uncharacterized protein
STRINGBra019801.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.11e-70ERF family protein
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]