PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8270_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 283aa    MW: 32277.6 Da    PI: 6.5842
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8270_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-092092432155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++++  LA+++gL+++q+ +WF N+R ++
  RrC8270_p1 209 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 243
                 569*****************************885 PP
2ELK41.52.7e-14163184122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  RrC8270_p1 163 ELKGQLLRKYSGYLGSLKQEFM 184
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.9E-192064IPR005540KNOX1
PfamPF037902.2E-202260IPR005540KNOX1
SMARTSM012567.0E-2671122IPR005541KNOX2
PfamPF037911.1E-2075120IPR005541KNOX2
SMARTSM011882.8E-8163184IPR005539ELK domain
PfamPF037894.4E-11163184IPR005539ELK domain
PROSITE profilePS5121311.174163183IPR005539ELK domain
PROSITE profilePS5007113.151183246IPR001356Homeobox domain
SMARTSM003895.3E-13185250IPR001356Homeobox domain
SuperFamilySSF466898.55E-20185261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-28188248IPR009057Homeodomain-like
CDDcd000863.23E-12195247No hitNo description
PfamPF059202.2E-17203242IPR008422Homeobox KN domain
PROSITE patternPS000270221244IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEINHQNELL TGGLNPCSSA SVKAKIMAHP HYHRLLLAYV NCQKVGAPPE VQTRLEETCS  60
SAAAAAASMG PTGSLGEDPG LDQFMEAYCE MLVKYEQELS KPFKEAMVFL QHVECQFKSL  120
SLSSPSSFSG YGEAAIERNN NGSSEEEVDM NNEFVDPQAE DRELKGQLLR KYSGYLGSLK  180
QEFMKKRKKG KLPKEARQQL LDWWSRHYKW PYPSEQQKLA LAESTGLDQK QINNWFINQR  240
KRHWKPSEDM QFVVMDATHP HHYFMDNVMG NPFPIDHISS TML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178187LKQEFMKKRK
2184188KKRKK
Functional Description ? help Back to Top
Source Description
UniProtRequired for shoot apical meristem formation during embryogenesis. Probably binds to the DNA sequence 5'-TGAC-3' (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4805850.0GU480585.1 Brassica rapa SHOOT MERISTEMLESS (STM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452225.10.0PREDICTED: homeobox protein SHOOT MERISTEMLESS
SwissprotQ9M6D91e-177STM_BRAOL; Homeobox protein SHOOT MERISTEMLESS
TrEMBLA0A397XTU00.0A0A397XTU0_BRACM; Uncharacterized protein
TrEMBLA0A3N6PYX60.0A0A3N6PYX6_BRACR; Uncharacterized protein
TrEMBLM4EE390.0M4EE39_BRARP; Uncharacterized protein
STRINGBra027050.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-172KNOX/ELK homeobox transcription factor