PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC824_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 258aa    MW: 28820.6 Da    PI: 6.7986
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC824_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.71.4e-3486142259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgsefprsYY+Ct +gCpvkkkvers  d++v+ei+Y+g+Hnhe
  RrC824_p3  86 DDGYNWRKYGQKQVKGSEFPRSYYKCTNQGCPVKKKVERSL-DGQVTEIIYKGQHNHE 142
                8****************************************.***************8 PP
2WRKY37.74e-12233256124
                ---SS-EEEEEEE--TT-SS-EEE CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                ldDgy+WrKYGqK+vkg+++prs 
  RrC824_p3 233 LDDGYRWRKYGQKVVKGNPYPRSK 256
                59********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-3177144IPR003657WRKY domain
SuperFamilySSF1182907.32E-2784144IPR003657WRKY domain
SMARTSM007745.4E-3985143IPR003657WRKY domain
PfamPF031067.0E-2786142IPR003657WRKY domain
PROSITE profilePS5081125.20186144IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-14219257IPR003657WRKY domain
SuperFamilySSF1182901.19E-10225257IPR003657WRKY domain
PROSITE profilePS5081116.811228258IPR003657WRKY domain
SMARTSM007740.0041233257IPR003657WRKY domain
PfamPF031064.7E-8234257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTHQQALTQV TAQAVQANAI NMQQPQTDEN PPSSSQVQSF SSDQPQNPTS APDDSSLLPQ  60
RETSDHITII EQRPSQQPLN VDKPADDGYN WRKYGQKQVK GSEFPRSYYK CTNQGCPVKK  120
KVERSLDGQV TEIIYKGQHN HEPPQNTKRG NKDSKENLNG SLINNNPNKT TREQHEAASQ  180
ATTEQMSEAS DSEEVGNGDT VRVLEPAAAV AASHRTVAEP RIIVQTTSEV DLLDDGYRWR  240
KYGQKVVKGN PYPRSKFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19851441474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110565.11e-142PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-126WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM4DJN81e-141M4DJN8_BRARP; Uncharacterized protein
STRINGBra016716.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-103WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]