PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8218_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 242aa    MW: 26076.5 Da    PI: 9.8851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8218_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-192373155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr ++ +gr++AeIrdp +   + r++lg+f++a eAa+a++aa+++l+g
  RrC8218_p3 23 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAVEAARAYDAAARNLRG 73
                68********.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-132373IPR001471AP2/ERF domain
CDDcd000183.57E-212381No hitNo description
SMARTSM003809.3E-382487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-312481IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-212482IPR016177DNA-binding domain
PROSITE profilePS5103223.132481IPR001471AP2/ERF domain
PRINTSPR003675.8E-102536IPR001471AP2/ERF domain
PRINTSPR003675.8E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRKGRGSSVV PPALHGGSAV KEPRYRGVRK RPWGRFAAEI RDPLKKSRVW LGTFDSAVEA  60
ARAYDAAARN LRGSKAKTNF PLDCSPSSPL RPLNYQNQMD PFMDHRLYGG GGGGGGGGGG  120
SFQEQQVISR PASSSLSSTV KSCSGPRPAA KATKRYPRTP PVAPEDCHSD CDSSSSVIDD  180
GDDIASSSSR LRKAPFLFDL NLPPLDGGVV DLFADDDLHC TDLLRAMIFI TTMQRKMMMT  240
TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201790781Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2479693e-92DQ247969.1 Brassica rapa subsp. pekinensis putative ethylene responsive element binding factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439949.11e-116PREDICTED: ethylene-responsive transcription factor 7-like
SwissprotQ9LDE42e-92ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A3P6F3491e-101A0A3P6F349_BRAOL; Uncharacterized protein
STRINGBo1g108970.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-62ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]