PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC8182_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 28102.4 Da PI: 4.8394 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.5 | 1.2e-27 | 5 | 81 | 1 | 78 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhPtdeel+++yL++kv+++ ++ +++ +vd++k+ePwdLp+k++ +ekewyfF+ rd+ky+tg r+n + RrC8182_p3 5 LPPGFRFHPTDEELITQYLCRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFCLRDRKYPTGLRTNEQL 81 79*************************999.88***************999999********************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-30 | 3 | 100 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.711 | 5 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-12 | 6 | 74 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEEKLPPGFR FHPTDEELIT QYLCRKVSDT GFTGKAVVDV DLNKCEPWDL PAKASMGEKE 60 WYFFCLRDRK YPTGLRTNEQ LKPVIGKPQE EWVVCRVFEK STAAKKPQEQ QPQSSFGSPC 120 DANSSMANEF EDIELQNMNT NSSTIDYNHI HQYSQNCTYS EDNTVSKAGL NMNMVTDIPS 180 WSTTSLLGQP LSPINSLLLK AFQIRNSYSF TNINPSTLQQ GVSNVMRKGS SSSQPQPQEE 240 AFNMDSIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-27 | 5 | 79 | 17 | 91 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-27 | 5 | 79 | 17 | 91 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-27 | 5 | 79 | 17 | 91 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-27 | 5 | 79 | 17 | 91 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-27 | 5 | 79 | 17 | 91 | NAC domain-containing protein 19 |
4dul_B | 2e-27 | 5 | 79 | 17 | 91 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026658 | 1e-69 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. | |||
GenBank | CP002686 | 1e-69 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492387.1 | 1e-155 | PREDICTED: NAC domain-containing protein 92-like | ||||
TrEMBL | A0A3N6Q9Q4 | 1e-145 | A0A3N6Q9Q4_BRACR; Uncharacterized protein | ||||
STRING | Bo3g071500.1 | 1e-144 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5527 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-118 | NAC domain containing protein 58 |