PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8119_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 401aa    MW: 46219.9 Da    PI: 9.2641
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8119_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013153176123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C+ Cg+ ++++ +Lk+H +  H
  RrC8119_p1 153 YVCGVCGRKCRTNLDLKKHFKQlH 176
                 9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10109.0E-573143IPR029060PIN domain-like
PROSITE profilePS5015710.741153181IPR007087Zinc finger, C2H2
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
CDDcd061679.61E-11167307No hitNo description
Gene3DG3DSA:3.40.50.10109.0E-5238292IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSLLCISIET LYPKPSLLHK PHFFPLPDTN PSFAGFPRRR LRQQPPIIKS CLKPASSSEI  60
DMVRNKEGIF APKEKKVVVL WDLDNKPPRG PPYEAATALR RVAEKLGRVV EISAYANRHA  120
FIHLPHWVVE ERRSRRSLDF AERKGEVVPA EPYVCGVCGR KCRTNLDLKK HFKQLHERER  180
QKKVNRMRTL KGKKRQKFKE RYVSGNEKYN EAARRLLTPK VGYGLEAELR RAGVYVKTVE  240
DKPQAADWAV KRQIQHSMTR GIDWLVLVSD DKDFSDMLRK AREADLGTVV VSDRDGVLGR  300
QADLWVPWMG VENGEIGEKD LVPEKRRRFD DDEEVEVERE REGDGLFSLS YDEDEREEMR  360
VESDGFGRFS LLDLGFCFGI VLGIKLSDPF FHSSTGEQSE I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642PRRRLRQ
2323328EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473260.10.0PREDICTED: uncharacterized protein LOC108844493
TrEMBLA0A3P6AW040.0A0A3P6AW04_BRAOL; Uncharacterized protein
STRINGBra029148.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein