PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8107_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 889aa MW: 98296.8 Da PI: 5.522

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8107_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.8e-29	547	597	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ RrC8107_p2 547 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 597 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	532	617	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-27	549	597	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.17E-22	780	872	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-22	785	867	No hit	No description
PROSITE profile	PS51745	20.599	787	870	IPR000270	PB1 domain
SMART	SM00666	1.4E-23	787	870	IPR000270	PB1 domain
CDD	cd06407	3.08E-34	788	869	No hit	No description
Pfam	PF00564	3.0E-17	789	869	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence Send to blast
MDNTSPDIPA EEMDGWVKNL ISEEDMFSSS SELVNFESFA SWCNTPSAND VLFTQYGLTT 60 SPSTTTPTPF GGFTALHVDP SPCFNGLEGC YVGEKRPVQE MSSQFHYLSG KRSKSSEIEC 120 SVPRSLSYSL DEKMLKALSL FMEFSGEGIL AQFWTPVKSG DQYMLSTCDQ AYLLDSRLSE 180 YREVSRKYTF SAEKSQYSSP GLPGRVFISG VPEWTSNVMY YKNAEYLRMK HALDNDVRGS 240 IAIPVLEASG SSCCGVLELV TCREKPNFDL EMDSVCRALQ AVNLQTSTIS RRQCFSSNQK 300 EALAEIRDVL RAVCHAHRLP LALAWLPCSC YSKGANDELV KVYGKKSDGN SLLCIEETAC 360 YVNDMEMEGF VNACMEHYLS RGQGVAGKAL ISNKPSFSSD VKTFDISEYP LVQHARKFGL 420 NAAVATKLRS TFTGDSDYIL EFFLPVNMKG SLEQQLLLDS LSGTMQRICR TLRTVSDEVG 480 LWNGDRMSNL TQTTVSEGSF QTTLLDTDVN YTRTSIISSD IAGSHGTTLQ QEPSGARKYE 540 KKKGSTEKNV SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS 600 LRKIQTVLDS VQGVEGGLKF DSVTGEFIAV GSLTQEFDTQ KSLPLGHDDA FVRRQCDMDD 660 DMSLEILKVK SHDGGRVKLE NSVEPNEARP TGSLMEPWTS KHAGLNYSDD FDIGTRSADV 720 KKDKDLCVRR CLSSLALAEP NPSISSSMSD SSNGSGAVLV RSSSTSMEQD QNQMLRTHNS 780 SGESGSLLTV KATYRDDTIR FKLDPYVVGC SQLYKEVAKR FKLQESAFQL KYLDDDEEWV 840 MLVTDSDLQE CLEILNGMRK HTVKFLVRDL LGAATGSSAG SNGYLGTGS

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence Send to blast

MDNTSPDIPA EEMDGWVKNL ISEEDMFSSS SELVNFESFA SWCNTPSAND VLFTQYGLTT  60
SPSTTTPTPF GGFTALHVDP SPCFNGLEGC YVGEKRPVQE MSSQFHYLSG KRSKSSEIEC  120
SVPRSLSYSL DEKMLKALSL FMEFSGEGIL AQFWTPVKSG DQYMLSTCDQ AYLLDSRLSE  180
YREVSRKYTF SAEKSQYSSP GLPGRVFISG VPEWTSNVMY YKNAEYLRMK HALDNDVRGS  240
IAIPVLEASG SSCCGVLELV TCREKPNFDL EMDSVCRALQ AVNLQTSTIS RRQCFSSNQK  300
EALAEIRDVL RAVCHAHRLP LALAWLPCSC YSKGANDELV KVYGKKSDGN SLLCIEETAC  360
YVNDMEMEGF VNACMEHYLS RGQGVAGKAL ISNKPSFSSD VKTFDISEYP LVQHARKFGL  420
NAAVATKLRS TFTGDSDYIL EFFLPVNMKG SLEQQLLLDS LSGTMQRICR TLRTVSDEVG  480
LWNGDRMSNL TQTTVSEGSF QTTLLDTDVN YTRTSIISSD IAGSHGTTLQ QEPSGARKYE  540
KKKGSTEKNV SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS  600
LRKIQTVLDS VQGVEGGLKF DSVTGEFIAV GSLTQEFDTQ KSLPLGHDDA FVRRQCDMDD  660
DMSLEILKVK SHDGGRVKLE NSVEPNEARP TGSLMEPWTS KHAGLNYSDD FDIGTRSADV  720
KKDKDLCVRR CLSSLALAEP NPSISSSMSD SSNGSGAVLV RSSSTSMEQD QNQMLRTHNS  780
SGESGSLLTV KATYRDDTIR FKLDPYVVGC SQLYKEVAKR FKLQESAFQL KYLDDDEEWV  840
MLVTDSDLQE CLEILNGMRK HTVKFLVRDL LGAATGSSAG SNGYLGTGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442478.1	0.0	PREDICTED: protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	M4CGP9	0.0	M4CGP9_BRARP; Uncharacterized protein
STRING	Bra003382.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein