PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8093_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 161aa    MW: 18082.4 Da    PI: 10.6148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8093_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-192171256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +gr++AeIrdp++   ++r++lg+f+t +eAa+a+++a+ +++g+
  RrC8093_p1 21 RYRGVRRRP-WGRYAAEIRDPVK---KARVWLGTFDTFNEAARAYDKAAIRFRGA 71
                7********.**********654...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-302178IPR001471AP2/ERF domain
PROSITE profilePS5103223.9472178IPR001471AP2/ERF domain
CDDcd000185.66E-322179No hitNo description
SuperFamilySSF541712.48E-222179IPR016177DNA-binding domain
SMARTSM003801.2E-332184IPR001471AP2/ERF domain
PfamPF008471.8E-132170IPR001471AP2/ERF domain
PRINTSPR003673.6E-102233IPR001471AP2/ERF domain
PRINTSPR003673.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAPTDKSAAV KTNDGQKKEH RYRGVRRRPW GRYAAEIRDP VKKARVWLGT FDTFNEAARA  60
YDKAAIRFRG AKAKTNFPYP NLVHDESPSQ TVVPSSSTIS DLNLETRFPF PKIQVKSGML  120
LIDSSSRSGS EASSAVMDRS PERPSRLPLD FDLNFPPKPE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-211579773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484989.11e-105PREDICTED: ethylene-responsive transcription factor 11
SwissprotQ9C5I33e-50ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A078H9F03e-88A0A078H9F0_BRANA; BnaA09g27300D protein
TrEMBLA0A3P5Y2R73e-88A0A3P5Y2R7_BRACM; Uncharacterized protein
TrEMBLM4EVR83e-88M4EVR8_BRARP; Uncharacterized protein
STRINGBra032901.1-P6e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.14e-37ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]