PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8090_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 488aa    MW: 53724.4 Da    PI: 6.6121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8090_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31236295159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  RrC8090_p1 236 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 295
                 58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-33221297IPR003657WRKY domain
SuperFamilySSF1182907.85E-28229297IPR003657WRKY domain
PROSITE profilePS5081128.908231297IPR003657WRKY domain
SMARTSM007741.6E-37236296IPR003657WRKY domain
PfamPF031061.5E-26237295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEEHSQDARE IAFLHSGDFL QRDSTLKDHQ PNESSVEHHH KPSIKEVDFF AVKSQPYDPS  60
QMRTTIVGSS GFNDELGPMN SCLRTSSDDG NNDKTKAQIS RLRLELERLH EENHKLKNLL  120
DEISESYNDL RSKVLLARPT QVEGLQQHED IPQAVSSQAL EDRKPTDMNN DIPATTLKRR  180
SPDDVDDRDL HRDSPKTPRL YQNKSTNHEE QQNHQDQLPF RKARVSVRAR SDATTVNDGC  240
QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAED TTILTTTYEG NHNHPLPPSA  300
TAMAATTSAA AAMLLSGSTT SNLHQTLSYP SAMSSSSSLY QNFPYTSTIA TLSATAPFPT  360
ITLDLTNPPR PLQPPPPPHF MSQYGPGEYL TNANQTRSIN DNYSQLLLPN LSGPQVPPRD  420
MVDTVRAAIA TDPNFTAALA AAISNIIGGG NENTINNNGN SKVDAKSGGS SNGDSPPLPQ  480
SCTTFSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21223298175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300580.0KF430058.1 Brassica rapa WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454672.10.0PREDICTED: probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A0D3DZW60.0A0A0D3DZW6_BRAOL; Uncharacterized protein
STRINGBo9g004230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein