PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC8087_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRF

Protein Properties

Length: 350aa MW: 39228 Da PI: 7.3326

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC8087_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	121	166	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+epgrC+RtDGKkWRCsr+v++ +k+C+rH+hrgr+rsrk++e+s RrC8087_p3 121 DPEPGRCKRTDGKKWRCSRDVVGSYKYCDRHIHRGRNRSRKPVETS 166 79****************************************9975 PP
2	QLQ	53.9	5.5e-19	54	88	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ+q+L+ Q+l+y+y++a++ vP+eLl +i+k RrC8087_p3 54 FTLAQWQELELQALIYRYMSAGASVPQELLIPIKK 88 *********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.5E-11	52	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.217	53	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-13	54	86	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.673	121	165	IPR014977	WRC domain
Pfam	PF08879	1.5E-20	122	164	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MSNSFSHQIQ SQTATSATAL PLFVPEPTSS SSYSCFSPDS SSSSSRFLKM GNFFTLAQWQ 60 ELELQALIYR YMSAGASVPQ ELLIPIKKSL FHQSHLNFLH YPLPHNFPHY QPWYWGRGAV 120 DPEPGRCKRT DGKKWRCSRD VVGSYKYCDR HIHRGRNRSR KPVETSTNTA TNAVSSFALG 180 EELGHGPNNL CSSHSSTQDL HLNSHLSCSS DMKQESNNNN KRPYEAHDGG TSDGHILRHF 240 FEDWPRTSDS TTRPMNSSTS HHSVSMPSNA SSDVSLKLST CNEEEEEANM RNNNNNNNNN 300 NEKEHQQSMN CWSSGGNHQN MDGPLAEALR SASPTSSLLH QMGISTEVFR

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MSNSFSHQIQ SQTATSATAL PLFVPEPTSS SSYSCFSPDS SSSSSRFLKM GNFFTLAQWQ  60
ELELQALIYR YMSAGASVPQ ELLIPIKKSL FHQSHLNFLH YPLPHNFPHY QPWYWGRGAV  120
DPEPGRCKRT DGKKWRCSRD VVGSYKYCDR HIHRGRNRSR KPVETSTNTA TNAVSSFALG  180
EELGHGPNNL CSSHSSTQDL HLNSHLSCSS DMKQESNNNN KRPYEAHDGG TSDGHILRHF  240
FEDWPRTSDS TTRPMNSSTS HHSVSMPSNA SSDVSLKLST CNEEEEEANM RNNNNNNNNN  300
NEKEHQQSMN CWSSGGNHQN MDGPLAEALR SASPTSSLLH QMGISTEVFR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018464832.1	0.0	PREDICTED: growth-regulating factor 4-like isoform X1
Swissprot	Q8L8A7	1e-136	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A0D3BYD8	0.0	A0A0D3BYD8_BRAOL; Uncharacterized protein
STRING	Bo4g122960.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-116	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]