PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7_p13
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 296aa    MW: 32133.4 Da    PI: 4.8474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7_p13genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-1892141255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  RrC7_p13  92 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTADMAARAHDVAALAIKG 141
               69****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.91992149IPR001471AP2/ERF domain
SMARTSM003805.9E-3792155IPR001471AP2/ERF domain
PfamPF008474.3E-1292141IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2192150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3092150IPR001471AP2/ERF domain
PRINTSPR003676.5E-1093104IPR001471AP2/ERF domain
CDDcd000181.98E-3193151No hitNo description
PRINTSPR003676.5E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
METQINLEKS ASQVTFITST ISAVSSSSAT ASLSNSPTST TSSSSSSSST TSNVETPKRK  60
PSRRSLSSLA VEDLDDQGGK RRKTNGGDKH PTYRGVRMRS WGKWVSEIRE PRKKSRIWLG  120
TYPTADMAAR AHDVAALAIK GTTAYLNFPE LFGELPRPVT NSPKDIQAAA TAAAVKWQDS  180
GGLHVDNSDI TEIAEAEPSR AVMAQSLSDS VVFSSDITTR ELSETSCAST TSFADKDKDE  240
EKLFDLPDLF TDGNEMVIRN DAFCYYSSTW QLCGADAGFR LEEPFFCLNE TDSSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1876152275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023881e-100AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAC2546051e-100AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
GenBankAK2296161e-100AK229616.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL19-54-M23.
GenBankAY0870521e-100AY087052.1 Arabidopsis thaliana clone 31044 mRNA, complete sequence.
GenBankBT0085641e-100BT008564.1 Arabidopsis thaliana clone U50797 putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankBT0086771e-100BT008677.1 Arabidopsis thaliana clone RAFL19-54-M23 (R50797) putative AP2 domain transcription factor (At2g44940) mRNA, complete cds.
GenBankCP0026851e-100CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434679.10.0PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-127ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A397Z6N91e-158A0A397Z6N9_BRACM; Uncharacterized protein
STRINGBra004878.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-92ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]