PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7996_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 22080.3 Da PI: 4.5365 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.3e-11 | 146 | 191 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +A +Y+k Lq RrC7996_p1 146 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLDEALQYVKALQ 191 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.284 | 140 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-15 | 143 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.38E-12 | 144 | 195 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 145 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-8 | 146 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-11 | 146 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MQSTQDGGGG GKGGGGDEDE EEEDDLKPDL CLTELLTGNS SGTTSRDSFE FPSAAVEQGL 60 YSHQVGFHRQ NSSPADFLSG SAASGSDGFF PNFGIPANYD YLSPNVDVSP AKEQMSGGMM 120 EDNKLLEDSV PFRVRAKRGC ATHPRSIAER VRRTRISDRI RRLQELVPNM DKQTNTADML 180 DEALQYVKAL QSQIQVYLHI CI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 15 | GGKGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411791 | 1e-72 | AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. | |||
GenBank | AF488612 | 1e-72 | AF488612.1 Arabidopsis thaliana clone bHLH080 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY093794 | 1e-72 | AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018487262.1 | 1e-120 | PREDICTED: transcription factor bHLH80-like | ||||
Swissprot | Q9C8P8 | 2e-86 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A078GPB6 | 2e-99 | A0A078GPB6_BRANA; BnaA05g18250D protein | ||||
TrEMBL | A0A397ZBJ4 | 2e-99 | A0A397ZBJ4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F028 | 2e-99 | M4F028_BRARP; Uncharacterized protein | ||||
STRING | Bra034421.1-P | 1e-100 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5104 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 3e-64 | bHLH family protein |