PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC793_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 24902.2 Da PI: 5.3855 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.4e-11 | 7 | 55 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +WT+eE+e l +v ++G+g W+ I + R+ ++k++w++ RrC793_p5 7 KWTPEEEEALMAGVLKHGPGKWRYILADTEyssvlHSRSNVDLKDKWRN 55 8**********************************9***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.641 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-16 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-4 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-14 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-8 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.82E-19 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGAPKHKWTP EEEEALMAGV LKHGPGKWRY ILADTEYSSV LHSRSNVDLK DKWRNISVAA 60 TCGSRKKAKQ DDENTKALTI LALTNGDDGG QQHFALSCDT PQDLFTSVDN MILEAITNFE 120 GPLGPDRNSI LMYPEVDANM QLNMEQLVTS RLEHLINIET IVKIEHRYSI SQGYAVAKAI 180 AEAELAIAEA EVAAREAENA EAKAEAARIF AKAAMKAMKA YNATRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481056.1 | 1e-132 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Swissprot | Q9M2X3 | 3e-68 | TRB3_ARATH; Telomere repeat-binding factor 3 | ||||
TrEMBL | A0A078GDE3 | 1e-104 | A0A078GDE3_BRANA; BnaC07g31550D protein | ||||
TrEMBL | A0A0D3DDQ8 | 1e-104 | A0A0D3DDQ8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F1T5 | 1e-104 | A0A3P6F1T5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g099090.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20262 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49850.1 | 3e-68 | telomere repeat binding factor 3 |
Publications ? help Back to Top | |||
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